Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS04370 and RALBFv3_RS04375 are separated by 257 nucleotides RALBFv3_RS04375 and RALBFv3_RS04380 are separated by 20 nucleotides RALBFv3_RS04380 and RALBFv3_RS04385 are separated by 82 nucleotides RALBFv3_RS04385 and RALBFv3_RS04390 are separated by 27 nucleotides
RALBFv3_RS04370: RALBFv3_RS04370 - formate dehydrogenase, at 981,535 to 981,765
_RS04370
RALBFv3_RS04375: RALBFv3_RS04375 - molecular chaperone, at 982,023 to 982,706
_RS04375
RALBFv3_RS04380: RALBFv3_RS04380 - 4Fe-4S ferredoxin, at 982,727 to 984,886
_RS04380
RALBFv3_RS04385: RALBFv3_RS04385 - DUF3306 domain-containing protein, at 984,969 to 985,550
_RS04385
RALBFv3_RS04390: RALBFv3_RS04390 - DUF3305 domain-containing protein, at 985,578 to 986,099
_RS04390
Position (kb) 982
983
984
985 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 981.809 kb on - strand at 981.809 kb on - strand at 981.809 kb on - strand at 981.828 kb on + strand at 981.862 kb on - strand at 982.351 kb on + strand, within RALBFv3_RS04375 at 982.354 kb on + strand, within RALBFv3_RS04375 at 982.354 kb on + strand, within RALBFv3_RS04375 at 982.355 kb on - strand, within RALBFv3_RS04375 at 982.355 kb on - strand, within RALBFv3_RS04375 at 982.408 kb on + strand, within RALBFv3_RS04375 at 982.624 kb on + strand, within RALBFv3_RS04375 at 982.625 kb on - strand, within RALBFv3_RS04375 at 983.493 kb on + strand, within RALBFv3_RS04380 at 983.682 kb on + strand, within RALBFv3_RS04380 at 983.734 kb on - strand, within RALBFv3_RS04380 at 983.739 kb on + strand, within RALBFv3_RS04380 at 983.739 kb on + strand, within RALBFv3_RS04380 at 983.739 kb on + strand, within RALBFv3_RS04380 at 983.740 kb on - strand, within RALBFv3_RS04380 at 983.740 kb on - strand, within RALBFv3_RS04380 at 983.740 kb on - strand, within RALBFv3_RS04380 at 983.925 kb on + strand, within RALBFv3_RS04380 at 983.925 kb on + strand, within RALBFv3_RS04380 at 983.926 kb on - strand, within RALBFv3_RS04380 at 983.926 kb on - strand, within RALBFv3_RS04380 at 983.926 kb on - strand, within RALBFv3_RS04380 at 984.021 kb on + strand, within RALBFv3_RS04380 at 984.022 kb on - strand, within RALBFv3_RS04380 at 984.022 kb on - strand, within RALBFv3_RS04380 at 984.199 kb on - strand, within RALBFv3_RS04380 at 984.199 kb on - strand, within RALBFv3_RS04380 at 984.199 kb on - strand, within RALBFv3_RS04380 at 984.244 kb on + strand, within RALBFv3_RS04380 at 984.898 kb on + strand at 984.975 kb on + strand at 984.976 kb on - strand at 985.228 kb on + strand, within RALBFv3_RS04385 at 985.228 kb on + strand, within RALBFv3_RS04385 at 985.228 kb on + strand, within RALBFv3_RS04385 at 985.228 kb on + strand, within RALBFv3_RS04385 at 985.228 kb on + strand, within RALBFv3_RS04385 at 985.229 kb on - strand, within RALBFv3_RS04385 at 985.229 kb on - strand, within RALBFv3_RS04385 at 985.229 kb on - strand, within RALBFv3_RS04385 at 985.229 kb on - strand, within RALBFv3_RS04385 at 985.229 kb on - strand, within RALBFv3_RS04385 at 985.232 kb on + strand, within RALBFv3_RS04385 at 985.232 kb on + strand, within RALBFv3_RS04385 at 985.233 kb on - strand, within RALBFv3_RS04385 at 985.233 kb on - strand, within RALBFv3_RS04385 at 985.233 kb on - strand, within RALBFv3_RS04385 at 985.233 kb on - strand, within RALBFv3_RS04385 at 985.233 kb on - strand, within RALBFv3_RS04385 at 985.583 kb on - strand at 985.583 kb on - strand at 985.583 kb on - strand at 985.583 kb on - strand at 985.648 kb on + strand, within RALBFv3_RS04390 at 985.663 kb on + strand, within RALBFv3_RS04390 at 985.664 kb on - strand, within RALBFv3_RS04390 at 985.750 kb on + strand, within RALBFv3_RS04390 at 985.750 kb on + strand, within RALBFv3_RS04390 at 985.765 kb on + strand, within RALBFv3_RS04390 at 985.767 kb on - strand, within RALBFv3_RS04390 at 985.859 kb on - strand, within RALBFv3_RS04390 at 985.859 kb on - strand, within RALBFv3_RS04390 at 985.861 kb on + strand, within RALBFv3_RS04390 at 985.861 kb on + strand, within RALBFv3_RS04390 at 985.862 kb on - strand, within RALBFv3_RS04390 at 985.862 kb on - strand, within RALBFv3_RS04390 at 985.862 kb on - strand, within RALBFv3_RS04390
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days remove 981,809 - +1.8 981,809 - +0.1 981,809 - -1.2 981,828 + +0.3 981,862 - +0.3 982,351 + RALBFv3_RS04375 0.48 +3.7 982,354 + RALBFv3_RS04375 0.48 +0.9 982,354 + RALBFv3_RS04375 0.48 -0.3 982,355 - RALBFv3_RS04375 0.49 -0.7 982,355 - RALBFv3_RS04375 0.49 -0.8 982,408 + RALBFv3_RS04375 0.56 +0.6 982,624 + RALBFv3_RS04375 0.88 -1.3 982,625 - RALBFv3_RS04375 0.88 -1.0 983,493 + RALBFv3_RS04380 0.35 +3.7 983,682 + RALBFv3_RS04380 0.44 +1.7 983,734 - RALBFv3_RS04380 0.47 +1.9 983,739 + RALBFv3_RS04380 0.47 +0.2 983,739 + RALBFv3_RS04380 0.47 +0.1 983,739 + RALBFv3_RS04380 0.47 +1.9 983,740 - RALBFv3_RS04380 0.47 +0.8 983,740 - RALBFv3_RS04380 0.47 +0.2 983,740 - RALBFv3_RS04380 0.47 -1.9 983,925 + RALBFv3_RS04380 0.55 +1.3 983,925 + RALBFv3_RS04380 0.55 -0.4 983,926 - RALBFv3_RS04380 0.56 -1.6 983,926 - RALBFv3_RS04380 0.56 +2.2 983,926 - RALBFv3_RS04380 0.56 +0.1 984,021 + RALBFv3_RS04380 0.60 -1.1 984,022 - RALBFv3_RS04380 0.60 -0.8 984,022 - RALBFv3_RS04380 0.60 -1.1 984,199 - RALBFv3_RS04380 0.68 -0.2 984,199 - RALBFv3_RS04380 0.68 +1.5 984,199 - RALBFv3_RS04380 0.68 +0.3 984,244 + RALBFv3_RS04380 0.70 +3.1 984,898 + +0.0 984,975 + +1.5 984,976 - +1.5 985,228 + RALBFv3_RS04385 0.45 -0.2 985,228 + RALBFv3_RS04385 0.45 +0.2 985,228 + RALBFv3_RS04385 0.45 +0.1 985,228 + RALBFv3_RS04385 0.45 +0.4 985,228 + RALBFv3_RS04385 0.45 -1.2 985,229 - RALBFv3_RS04385 0.45 +0.5 985,229 - RALBFv3_RS04385 0.45 +2.1 985,229 - RALBFv3_RS04385 0.45 -0.2 985,229 - RALBFv3_RS04385 0.45 -0.8 985,229 - RALBFv3_RS04385 0.45 -1.1 985,232 + RALBFv3_RS04385 0.45 +0.4 985,232 + RALBFv3_RS04385 0.45 +2.2 985,233 - RALBFv3_RS04385 0.45 -0.1 985,233 - RALBFv3_RS04385 0.45 -0.6 985,233 - RALBFv3_RS04385 0.45 -1.1 985,233 - RALBFv3_RS04385 0.45 -1.3 985,233 - RALBFv3_RS04385 0.45 +0.5 985,583 - -0.9 985,583 - -0.1 985,583 - -0.1 985,583 - +2.2 985,648 + RALBFv3_RS04390 0.13 -1.0 985,663 + RALBFv3_RS04390 0.16 -0.2 985,664 - RALBFv3_RS04390 0.16 -0.6 985,750 + RALBFv3_RS04390 0.33 -1.5 985,750 + RALBFv3_RS04390 0.33 +0.4 985,765 + RALBFv3_RS04390 0.36 -0.2 985,767 - RALBFv3_RS04390 0.36 -0.5 985,859 - RALBFv3_RS04390 0.54 -1.1 985,859 - RALBFv3_RS04390 0.54 +0.1 985,861 + RALBFv3_RS04390 0.54 +0.8 985,861 + RALBFv3_RS04390 0.54 +0.5 985,862 - RALBFv3_RS04390 0.54 +0.3 985,862 - RALBFv3_RS04390 0.54 -0.8 985,862 - RALBFv3_RS04390 0.54 -0.4
Or see this region's nucleotide sequence