Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02795 and RALBFv3_RS02800 are separated by 127 nucleotides RALBFv3_RS02800 and RALBFv3_RS02805 overlap by 4 nucleotides
RALBFv3_RS02795: RALBFv3_RS02795 - hypothetical protein, at 620,472 to 620,777
_RS02795
RALBFv3_RS02800: RALBFv3_RS02800 - amino acid transporter, at 620,905 to 621,513
_RS02800
RALBFv3_RS02805: RALBFv3_RS02805 - fatty acid desaturase, at 621,510 to 622,451
_RS02805
Position (kb) 621
622
623 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 620.524 kb on + strand, within RALBFv3_RS02795 at 620.689 kb on + strand, within RALBFv3_RS02795 at 620.689 kb on + strand, within RALBFv3_RS02795 at 620.689 kb on + strand, within RALBFv3_RS02795 at 620.715 kb on - strand, within RALBFv3_RS02795 at 620.715 kb on - strand, within RALBFv3_RS02795 at 621.138 kb on - strand, within RALBFv3_RS02800 at 621.487 kb on + strand at 621.652 kb on + strand, within RALBFv3_RS02805 at 621.653 kb on - strand, within RALBFv3_RS02805 at 621.761 kb on - strand, within RALBFv3_RS02805 at 621.836 kb on - strand, within RALBFv3_RS02805 at 621.881 kb on - strand, within RALBFv3_RS02805 at 621.895 kb on + strand, within RALBFv3_RS02805 at 621.895 kb on + strand, within RALBFv3_RS02805 at 621.895 kb on + strand, within RALBFv3_RS02805 at 621.896 kb on - strand, within RALBFv3_RS02805 at 621.896 kb on - strand, within RALBFv3_RS02805 at 621.896 kb on - strand, within RALBFv3_RS02805 at 621.896 kb on - strand, within RALBFv3_RS02805 at 621.907 kb on + strand, within RALBFv3_RS02805 at 621.908 kb on - strand, within RALBFv3_RS02805 at 621.908 kb on - strand, within RALBFv3_RS02805 at 621.953 kb on - strand, within RALBFv3_RS02805 at 622.023 kb on - strand, within RALBFv3_RS02805 at 622.023 kb on - strand, within RALBFv3_RS02805 at 622.023 kb on - strand, within RALBFv3_RS02805 at 622.309 kb on + strand, within RALBFv3_RS02805 at 622.310 kb on - strand, within RALBFv3_RS02805 at 622.310 kb on - strand, within RALBFv3_RS02805 at 622.310 kb on - strand, within RALBFv3_RS02805 at 622.444 kb on + strand at 622.905 kb on + strand at 622.905 kb on + strand at 622.978 kb on - strand at 622.981 kb on - strand at 622.983 kb on + strand at 622.983 kb on + strand at 622.983 kb on + strand at 622.983 kb on + strand at 623.082 kb on + strand at 623.082 kb on + strand at 623.083 kb on - strand at 623.105 kb on + strand at 623.182 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days remove 620,524 + RALBFv3_RS02795 0.17 +1.7 620,689 + RALBFv3_RS02795 0.71 +0.4 620,689 + RALBFv3_RS02795 0.71 +0.9 620,689 + RALBFv3_RS02795 0.71 -0.4 620,715 - RALBFv3_RS02795 0.79 +0.7 620,715 - RALBFv3_RS02795 0.79 -1.3 621,138 - RALBFv3_RS02800 0.38 +0.1 621,487 + -0.7 621,652 + RALBFv3_RS02805 0.15 -0.4 621,653 - RALBFv3_RS02805 0.15 -0.6 621,761 - RALBFv3_RS02805 0.27 -0.3 621,836 - RALBFv3_RS02805 0.35 -0.3 621,881 - RALBFv3_RS02805 0.39 -0.8 621,895 + RALBFv3_RS02805 0.41 -0.9 621,895 + RALBFv3_RS02805 0.41 +1.0 621,895 + RALBFv3_RS02805 0.41 -1.6 621,896 - RALBFv3_RS02805 0.41 -1.0 621,896 - RALBFv3_RS02805 0.41 -1.1 621,896 - RALBFv3_RS02805 0.41 -1.1 621,896 - RALBFv3_RS02805 0.41 -0.8 621,907 + RALBFv3_RS02805 0.42 -1.0 621,908 - RALBFv3_RS02805 0.42 -1.6 621,908 - RALBFv3_RS02805 0.42 +0.1 621,953 - RALBFv3_RS02805 0.47 -0.5 622,023 - RALBFv3_RS02805 0.54 -1.0 622,023 - RALBFv3_RS02805 0.54 +0.1 622,023 - RALBFv3_RS02805 0.54 +0.5 622,309 + RALBFv3_RS02805 0.85 -1.9 622,310 - RALBFv3_RS02805 0.85 -1.1 622,310 - RALBFv3_RS02805 0.85 +0.4 622,310 - RALBFv3_RS02805 0.85 -1.0 622,444 + -2.4 622,905 + -1.6 622,905 + -1.2 622,978 - -0.6 622,981 - -0.3 622,983 + -2.2 622,983 + -0.4 622,983 + +0.1 622,983 + -0.8 623,082 + +0.1 623,082 + -0.5 623,083 - +3.5 623,105 + -0.0 623,182 + -0.7
Or see this region's nucleotide sequence