Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02290 and RALBFv3_RS02295 are separated by 157 nucleotides RALBFv3_RS02295 and RALBFv3_RS02300 are separated by 69 nucleotides RALBFv3_RS02300 and RALBFv3_RS02305 are separated by 22 nucleotides RALBFv3_RS02305 and RALBFv3_RS02310 are separated by 7 nucleotides
RALBFv3_RS02290: RALBFv3_RS02290 - Fis family transcriptional regulator, at 512,527 to 513,348
_RS02290
RALBFv3_RS02295: RALBFv3_RS02295 - tRNA-Val, at 513,506 to 513,580
_RS02295
RALBFv3_RS02300: RALBFv3_RS02300 - DNA polymerase III subunit epsilon, at 513,650 to 514,378
_RS02300
RALBFv3_RS02305: RALBFv3_RS02305 - formyltetrahydrofolate deformylase, at 514,401 to 515,267
_RS02305
RALBFv3_RS02310: RALBFv3_RS02310 - DUF4743 domain-containing protein, at 515,275 to 516,078
_RS02310
Position (kb) 513
514
515 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 512.701 kb on - strand, within RALBFv3_RS02290 at 512.858 kb on + strand, within RALBFv3_RS02290 at 512.859 kb on - strand, within RALBFv3_RS02290 at 512.863 kb on - strand, within RALBFv3_RS02290 at 512.900 kb on + strand, within RALBFv3_RS02290 at 512.901 kb on - strand, within RALBFv3_RS02290 at 512.901 kb on - strand, within RALBFv3_RS02290 at 512.965 kb on + strand, within RALBFv3_RS02290 at 513.034 kb on + strand, within RALBFv3_RS02290 at 513.034 kb on + strand, within RALBFv3_RS02290 at 513.035 kb on - strand, within RALBFv3_RS02290 at 513.035 kb on - strand, within RALBFv3_RS02290 at 513.035 kb on - strand, within RALBFv3_RS02290 at 513.066 kb on + strand, within RALBFv3_RS02290 at 513.066 kb on + strand, within RALBFv3_RS02290 at 513.067 kb on - strand, within RALBFv3_RS02290 at 513.108 kb on - strand, within RALBFv3_RS02290 at 513.108 kb on - strand, within RALBFv3_RS02290 at 513.177 kb on + strand, within RALBFv3_RS02290 at 513.178 kb on - strand, within RALBFv3_RS02290 at 513.213 kb on - strand, within RALBFv3_RS02290 at 514.400 kb on - strand at 514.403 kb on - strand at 514.403 kb on - strand at 514.403 kb on - strand at 514.592 kb on - strand, within RALBFv3_RS02305 at 514.592 kb on - strand, within RALBFv3_RS02305 at 514.592 kb on - strand, within RALBFv3_RS02305 at 514.640 kb on - strand, within RALBFv3_RS02305 at 514.643 kb on - strand, within RALBFv3_RS02305 at 514.742 kb on - strand, within RALBFv3_RS02305 at 514.742 kb on - strand, within RALBFv3_RS02305 at 514.883 kb on - strand, within RALBFv3_RS02305 at 515.376 kb on + strand, within RALBFv3_RS02310 at 515.377 kb on - strand, within RALBFv3_RS02310
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days remove 512,701 - RALBFv3_RS02290 0.21 +0.7 512,858 + RALBFv3_RS02290 0.40 -1.5 512,859 - RALBFv3_RS02290 0.40 -1.8 512,863 - RALBFv3_RS02290 0.41 -1.8 512,900 + RALBFv3_RS02290 0.45 -0.0 512,901 - RALBFv3_RS02290 0.45 -2.7 512,901 - RALBFv3_RS02290 0.45 -1.6 512,965 + RALBFv3_RS02290 0.53 +0.9 513,034 + RALBFv3_RS02290 0.62 -0.4 513,034 + RALBFv3_RS02290 0.62 +1.7 513,035 - RALBFv3_RS02290 0.62 -0.5 513,035 - RALBFv3_RS02290 0.62 -2.8 513,035 - RALBFv3_RS02290 0.62 -2.5 513,066 + RALBFv3_RS02290 0.66 -1.8 513,066 + RALBFv3_RS02290 0.66 -0.7 513,067 - RALBFv3_RS02290 0.66 +0.5 513,108 - RALBFv3_RS02290 0.71 +1.7 513,108 - RALBFv3_RS02290 0.71 +0.9 513,177 + RALBFv3_RS02290 0.79 +0.9 513,178 - RALBFv3_RS02290 0.79 -1.3 513,213 - RALBFv3_RS02290 0.83 -0.2 514,400 - +0.4 514,403 - -1.6 514,403 - -0.1 514,403 - +0.2 514,592 - RALBFv3_RS02305 0.22 -0.2 514,592 - RALBFv3_RS02305 0.22 -0.5 514,592 - RALBFv3_RS02305 0.22 -0.9 514,640 - RALBFv3_RS02305 0.28 -1.2 514,643 - RALBFv3_RS02305 0.28 +2.7 514,742 - RALBFv3_RS02305 0.39 -0.1 514,742 - RALBFv3_RS02305 0.39 -0.2 514,883 - RALBFv3_RS02305 0.56 +0.4 515,376 + RALBFv3_RS02310 0.13 +0.5 515,377 - RALBFv3_RS02310 0.13 +0.1
Or see this region's nucleotide sequence