Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS01425

Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS01420 and RALBFv3_RS01425 are separated by 220 nucleotidesRALBFv3_RS01425 and RALBFv3_RS01430 are separated by 88 nucleotidesRALBFv3_RS01430 and RALBFv3_RS01435 are separated by 95 nucleotides RALBFv3_RS01420: RALBFv3_RS01420 - two-component sensor histidine kinase, at 318,944 to 320,305 _RS01420 RALBFv3_RS01425: RALBFv3_RS01425 - peroxiredoxin, at 320,526 to 321,074 _RS01425 RALBFv3_RS01430: RALBFv3_RS01430 - carboxymuconolactone decarboxylase family protein, at 321,163 to 321,690 _RS01430 RALBFv3_RS01435: RALBFv3_RS01435 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 321,786 to 322,292 _RS01435 Position (kb) 320 321 322Strain fitness (log2 ratio) -1 0 1 2at 320.384 kb on + strandat 320.395 kb on - strandat 320.398 kb on - strandat 320.664 kb on + strand, within RALBFv3_RS01425at 320.665 kb on - strand, within RALBFv3_RS01425at 321.202 kb on + strandat 321.482 kb on - strand, within RALBFv3_RS01430at 321.523 kb on + strand, within RALBFv3_RS01430at 321.524 kb on - strand, within RALBFv3_RS01430at 321.524 kb on - strand, within RALBFv3_RS01430at 321.524 kb on - strand, within RALBFv3_RS01430at 321.524 kb on - strand, within RALBFv3_RS01430

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
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320,384 + +1.3
320,395 - -0.3
320,398 - -0.4
320,664 + RALBFv3_RS01425 0.25 +0.5
320,665 - RALBFv3_RS01425 0.25 +0.3
321,202 + -0.2
321,482 - RALBFv3_RS01430 0.60 -1.3
321,523 + RALBFv3_RS01430 0.68 +2.5
321,524 - RALBFv3_RS01430 0.68 +0.4
321,524 - RALBFv3_RS01430 0.68 -0.2
321,524 - RALBFv3_RS01430 0.68 -1.2
321,524 - RALBFv3_RS01430 0.68 -0.2

Or see this region's nucleotide sequence