Experiment: RCH2_defined_glucose with MS_media 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26885 and BWI76_RS26890 are separated by 98 nucleotides BWI76_RS26890 and BWI76_RS26895 are separated by 429 nucleotides BWI76_RS26895 and BWI76_RS26900 are separated by 89 nucleotides
BWI76_RS26885: BWI76_RS26885 - ABC transporter substrate-binding protein, at 5,577,554 to 5,579,161
_RS26885
BWI76_RS26890: BWI76_RS26890 - hypothetical protein, at 5,579,260 to 5,579,502
_RS26890
BWI76_RS26895: BWI76_RS26895 - tRNA-Pro, at 5,579,932 to 5,580,008
_RS26895
BWI76_RS26900: BWI76_RS26900 - phosphoethanolamine transferase, at 5,580,098 to 5,581,786
_RS26900
Position (kb) 5579
5580 Strain fitness (log2 ratio) -2
-1
0
1 at 5578.284 kb on + strand, within BWI76_RS26885 at 5578.302 kb on - strand, within BWI76_RS26885 at 5578.314 kb on + strand, within BWI76_RS26885 at 5578.406 kb on - strand, within BWI76_RS26885 at 5578.414 kb on + strand, within BWI76_RS26885 at 5578.422 kb on - strand, within BWI76_RS26885 at 5578.422 kb on - strand, within BWI76_RS26885 at 5578.487 kb on - strand, within BWI76_RS26885 at 5578.536 kb on - strand, within BWI76_RS26885 at 5578.536 kb on - strand, within BWI76_RS26885 at 5578.580 kb on - strand, within BWI76_RS26885 at 5578.668 kb on + strand, within BWI76_RS26885 at 5578.711 kb on + strand, within BWI76_RS26885 at 5578.715 kb on + strand, within BWI76_RS26885 at 5578.877 kb on - strand, within BWI76_RS26885 at 5578.879 kb on + strand, within BWI76_RS26885 at 5578.879 kb on + strand, within BWI76_RS26885 at 5578.885 kb on + strand, within BWI76_RS26885 at 5578.885 kb on + strand, within BWI76_RS26885 at 5578.886 kb on + strand, within BWI76_RS26885 at 5578.894 kb on - strand, within BWI76_RS26885 at 5578.894 kb on - strand, within BWI76_RS26885 at 5578.894 kb on - strand, within BWI76_RS26885 at 5578.942 kb on + strand, within BWI76_RS26885 at 5578.987 kb on + strand, within BWI76_RS26885 at 5578.995 kb on - strand, within BWI76_RS26885 at 5578.995 kb on - strand, within BWI76_RS26885 at 5579.019 kb on - strand at 5579.032 kb on + strand at 5579.040 kb on - strand at 5579.080 kb on + strand at 5579.088 kb on - strand at 5579.088 kb on - strand at 5579.100 kb on - strand at 5579.121 kb on - strand at 5579.121 kb on - strand at 5579.122 kb on - strand at 5579.124 kb on + strand at 5579.132 kb on - strand at 5579.193 kb on + strand at 5579.230 kb on + strand at 5579.238 kb on - strand at 5579.247 kb on + strand at 5579.257 kb on - strand at 5579.267 kb on - strand at 5579.270 kb on - strand at 5579.303 kb on - strand, within BWI76_RS26890 at 5579.476 kb on - strand, within BWI76_RS26890 at 5579.715 kb on + strand at 5579.715 kb on + strand at 5579.715 kb on + strand at 5579.715 kb on + strand at 5579.723 kb on - strand at 5579.725 kb on - strand at 5579.753 kb on + strand at 5579.867 kb on + strand at 5580.174 kb on - strand at 5580.183 kb on - strand at 5580.193 kb on - strand at 5580.193 kb on - strand at 5580.272 kb on - strand, within BWI76_RS26900 at 5580.497 kb on - strand, within BWI76_RS26900
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x remove 5,578,284 + BWI76_RS26885 0.45 +0.8 5,578,302 - BWI76_RS26885 0.47 +1.1 5,578,314 + BWI76_RS26885 0.47 +0.0 5,578,406 - BWI76_RS26885 0.53 -0.4 5,578,414 + BWI76_RS26885 0.53 -0.5 5,578,422 - BWI76_RS26885 0.54 +0.4 5,578,422 - BWI76_RS26885 0.54 -0.3 5,578,487 - BWI76_RS26885 0.58 -1.2 5,578,536 - BWI76_RS26885 0.61 -0.5 5,578,536 - BWI76_RS26885 0.61 -0.0 5,578,580 - BWI76_RS26885 0.64 -2.5 5,578,668 + BWI76_RS26885 0.69 -0.2 5,578,711 + BWI76_RS26885 0.72 -0.7 5,578,715 + BWI76_RS26885 0.72 +0.2 5,578,877 - BWI76_RS26885 0.82 +0.9 5,578,879 + BWI76_RS26885 0.82 -0.5 5,578,879 + BWI76_RS26885 0.82 -0.1 5,578,885 + BWI76_RS26885 0.83 -0.6 5,578,885 + BWI76_RS26885 0.83 +0.1 5,578,886 + BWI76_RS26885 0.83 -0.0 5,578,894 - BWI76_RS26885 0.83 -1.2 5,578,894 - BWI76_RS26885 0.83 +0.2 5,578,894 - BWI76_RS26885 0.83 +0.1 5,578,942 + BWI76_RS26885 0.86 -1.0 5,578,987 + BWI76_RS26885 0.89 -0.7 5,578,995 - BWI76_RS26885 0.90 -0.8 5,578,995 - BWI76_RS26885 0.90 -0.4 5,579,019 - +1.4 5,579,032 + -1.9 5,579,040 - -0.2 5,579,080 + +0.1 5,579,088 - -0.9 5,579,088 - -1.2 5,579,100 - -0.1 5,579,121 - -0.7 5,579,121 - -0.2 5,579,122 - +1.5 5,579,124 + -0.4 5,579,132 - -1.5 5,579,193 + +0.4 5,579,230 + -1.7 5,579,238 - -0.2 5,579,247 + -0.3 5,579,257 - -0.3 5,579,267 - +0.1 5,579,270 - -0.2 5,579,303 - BWI76_RS26890 0.18 -0.5 5,579,476 - BWI76_RS26890 0.89 -1.5 5,579,715 + +1.2 5,579,715 + -0.3 5,579,715 + -0.2 5,579,715 + +0.4 5,579,723 - -0.1 5,579,725 - +0.2 5,579,753 + -0.1 5,579,867 + -0.6 5,580,174 - -0.1 5,580,183 - +0.1 5,580,193 - -0.2 5,580,193 - -0.5 5,580,272 - BWI76_RS26900 0.10 -0.8 5,580,497 - BWI76_RS26900 0.24 -0.8
Or see this region's nucleotide sequence