Experiment: RCH2_defined_glucose with MS_media 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16750 and BWI76_RS16755 are separated by 23 nucleotides BWI76_RS16755 and BWI76_RS16760 are separated by 57 nucleotides BWI76_RS16760 and BWI76_RS16765 overlap by 8 nucleotides
BWI76_RS16750: BWI76_RS16750 - acetolactate synthase, at 3,469,262 to 3,470,941
_RS16750
BWI76_RS16755: BWI76_RS16755 - acetoin reductase, at 3,470,965 to 3,471,735
_RS16755
BWI76_RS16760: BWI76_RS16760 - lipase, at 3,471,793 to 3,472,863
_RS16760
BWI76_RS16765: BWI76_RS16765 - spermidine/putrescine ABC transporter permease, at 3,472,856 to 3,474,625
_RS16765
Position (kb)
3471
3472
3473 Strain fitness (log2 ratio)
-1
0
1
2 at 3470.925 kb on - strand at 3471.142 kb on - strand, within BWI76_RS16755 at 3471.229 kb on - strand, within BWI76_RS16755 at 3471.754 kb on - strand at 3471.859 kb on - strand at 3471.966 kb on - strand, within BWI76_RS16760 at 3471.970 kb on - strand, within BWI76_RS16760 at 3472.087 kb on - strand, within BWI76_RS16760 at 3472.494 kb on + strand at 3472.540 kb on - strand, within BWI76_RS16760 at 3472.540 kb on - strand, within BWI76_RS16760 at 3472.611 kb on + strand, within BWI76_RS16760 at 3472.998 kb on + strand at 3473.131 kb on + strand, within BWI76_RS16765 at 3473.269 kb on + strand, within BWI76_RS16765 at 3473.424 kb on - strand, within BWI76_RS16765
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x remove 3,470,925 - +0.4 3,471,142 - BWI76_RS16755 0.23 -0.3 3,471,229 - BWI76_RS16755 0.34 -0.6 3,471,754 - -0.5 3,471,859 - -0.4 3,471,966 - BWI76_RS16760 0.16 -0.1 3,471,970 - BWI76_RS16760 0.17 -0.2 3,472,087 - BWI76_RS16760 0.27 -0.6 3,472,494 + +0.4 3,472,540 - BWI76_RS16760 0.70 +1.2 3,472,540 - BWI76_RS16760 0.70 +2.6 3,472,611 + BWI76_RS16760 0.76 +0.8 3,472,998 + +0.4 3,473,131 + BWI76_RS16765 0.16 -0.4 3,473,269 + BWI76_RS16765 0.23 -1.0 3,473,424 - BWI76_RS16765 0.32 -0.0
Or see this region's nucleotide sequence