Experiment: RCH2_defined_glucose with MS_media 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11680 and BWI76_RS11685 overlap by 4 nucleotides BWI76_RS11685 and BWI76_RS11690 are separated by 12 nucleotides
BWI76_RS11680: BWI76_RS11680 - succinylglutamate-semialdehyde dehydrogenase, at 2,457,109 to 2,458,587
_RS11680
BWI76_RS11685: BWI76_RS11685 - Succinylarginine dihydrolase (EC 3.5.3.23) (from data) , at 2,458,584 to 2,459,909
_RS11685
BWI76_RS11690: BWI76_RS11690 - succinylglutamate desuccinylase, at 2,459,922 to 2,460,887
_RS11690
Position (kb)
2458
2459
2460 Strain fitness (log2 ratio)
-1
0
1 at 2457.686 kb on + strand, within BWI76_RS11680 at 2457.686 kb on + strand, within BWI76_RS11680 at 2457.694 kb on - strand, within BWI76_RS11680 at 2458.256 kb on - strand, within BWI76_RS11680 at 2459.086 kb on - strand, within BWI76_RS11685 at 2459.212 kb on - strand, within BWI76_RS11685 at 2459.495 kb on + strand, within BWI76_RS11685 at 2459.605 kb on + strand, within BWI76_RS11685 at 2459.632 kb on + strand, within BWI76_RS11685 at 2459.761 kb on + strand, within BWI76_RS11685 at 2459.791 kb on - strand at 2459.868 kb on - strand at 2460.004 kb on + strand at 2460.154 kb on + strand, within BWI76_RS11690 at 2460.533 kb on + strand, within BWI76_RS11690 at 2460.706 kb on + strand, within BWI76_RS11690 at 2460.739 kb on + strand, within BWI76_RS11690 at 2460.747 kb on - strand, within BWI76_RS11690 at 2460.861 kb on + strand at 2460.861 kb on + strand at 2460.862 kb on + strand at 2460.869 kb on - strand at 2460.870 kb on + strand at 2460.870 kb on - strand at 2460.872 kb on + strand at 2460.878 kb on - strand at 2460.878 kb on - strand at 2460.878 kb on - strand at 2460.886 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x remove 2,457,686 + BWI76_RS11680 0.39 -0.0 2,457,686 + BWI76_RS11680 0.39 -0.1 2,457,694 - BWI76_RS11680 0.40 -0.8 2,458,256 - BWI76_RS11680 0.78 +0.9 2,459,086 - BWI76_RS11685 0.38 +0.1 2,459,212 - BWI76_RS11685 0.47 +1.5 2,459,495 + BWI76_RS11685 0.69 -0.4 2,459,605 + BWI76_RS11685 0.77 -0.1 2,459,632 + BWI76_RS11685 0.79 +0.6 2,459,761 + BWI76_RS11685 0.89 +0.3 2,459,791 - +0.2 2,459,868 - -0.0 2,460,004 + -0.3 2,460,154 + BWI76_RS11690 0.24 -0.9 2,460,533 + BWI76_RS11690 0.63 +0.1 2,460,706 + BWI76_RS11690 0.81 -0.1 2,460,739 + BWI76_RS11690 0.85 -0.3 2,460,747 - BWI76_RS11690 0.85 -0.2 2,460,861 + -0.8 2,460,861 + +0.5 2,460,862 + -0.3 2,460,869 - +0.4 2,460,870 + -0.1 2,460,870 - +0.0 2,460,872 + -0.4 2,460,878 - +0.9 2,460,878 - +0.0 2,460,878 - -0.2 2,460,886 - +0.8
Or see this region's nucleotide sequence