Strain Fitness in Shewanella oneidensis MR-1 around SOA0159

Experiment: SBM - with RNA protect

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SBM - with RNA protect
146,493	-		SOA0157	0.46	+2.2
146,493	-		SOA0157	0.46	+0.4
146,493	-		SOA0157	0.46	+0.8
146,493	-		SOA0157	0.46	-0.0
146,493	-		SOA0157	0.46	-2.2
146,498	-		SOA0157	0.47	+0.7
146,498	-		SOA0157	0.47	+0.5
146,499	-		SOA0157	0.48	+1.8
146,499	-		SOA0157	0.48	+0.3
146,557	+		SOA0157	0.60	+0.2
146,557	+		SOA0157	0.60	+2.0
146,568	+		SOA0157	0.63	+0.9
146,573	+		SOA0157	0.64	+0.8
146,573	+		SOA0157	0.64	+0.1
146,573	+		SOA0157	0.64	+0.0
146,581	-		SOA0157	0.66	+1.3
146,583	+		SOA0157	0.66	+0.4
146,591	-		SOA0157	0.68	-0.2
146,599	-		SOA0157	0.70	-0.9
146,607	+		SOA0157	0.71	+0.2
146,616	+		SOA0157	0.73	-0.0
146,618	+		SOA0157	0.74	+0.1
146,621	-		SOA0157	0.74	-0.7
146,622	+		SOA0157	0.75	+0.0
146,625	-		SOA0157	0.75	+0.3
146,625	-		SOA0157	0.75	+1.1
146,627	+		SOA0157	0.76	-1.3
146,627	-		SOA0157	0.76	-0.2
146,630	-		SOA0157	0.76	+0.1
146,632	+		SOA0157	0.77	+0.1
146,640	-		SOA0157	0.79	+0.8
146,672	+		SOA0157	0.86	+0.3
146,770	-				+2.3
146,811	+				-1.3
146,843	-		SO_A0158	0.10	-0.5
146,843	-		SO_A0158	0.10	-0.6
146,853	-		SO_A0158	0.13	-1.5
146,855	-		SO_A0158	0.13	-1.0
146,856	+		SO_A0158	0.13	-2.4
146,864	-		SO_A0158	0.15	-0.2
146,874	-		SO_A0158	0.18	+2.0
146,894	+		SO_A0158	0.23	-0.4
146,902	-		SO_A0158	0.25	+0.2
146,941	-		SO_A0158	0.35	-0.1
146,947	-		SO_A0158	0.37	-1.1
147,039	+		SO_A0158	0.60	-1.7
147,083	+		SO_A0158	0.72	+0.2
147,083	+		SO_A0158	0.72	-0.3
147,091	-		SO_A0158	0.74	-0.3
147,097	+		SO_A0158	0.75	-2.5
147,097	+		SO_A0158	0.75	-1.5
147,100	+		SO_A0158	0.76	-1.7
147,100	+		SO_A0158	0.76	-0.7
147,100	+		SO_A0158	0.76	-0.5
147,100	+		SO_A0158	0.76	-2.2
147,100	+		SO_A0158	0.76	-0.3
147,100	+		SO_A0158	0.76	-1.5
147,108	-		SO_A0158	0.78	+0.7
147,108	-		SO_A0158	0.78	-0.2
147,108	-		SO_A0158	0.78	+0.8
147,110	+		SO_A0158	0.78	-0.5
147,126	+		SO_A0158	0.83	-1.7
147,126	+		SO_A0158	0.83	-1.0
147,126	+		SO_A0158	0.83	+1.5
147,126	+		SO_A0158	0.83	-0.0
147,126	+		SO_A0158	0.83	-0.6
147,126	+		SO_A0158	0.83	-0.2
147,126	+		SO_A0158	0.83	-0.1
147,126	+		SO_A0158	0.83	-2.5
147,134	-		SO_A0158	0.85	-0.2
147,134	-		SO_A0158	0.85	-0.3
147,134	-		SO_A0158	0.85	+0.1
147,134	-		SO_A0158	0.85	-0.1
147,134	-		SO_A0158	0.85	-2.2
147,134	-		SO_A0158	0.85	+0.4
147,134	-		SO_A0158	0.85	-2.2
147,134	-		SO_A0158	0.85	+0.5
147,134	-		SO_A0158	0.85	-0.5
147,166	+				-1.3
147,166	+				-0.2
147,166	+				-0.6
147,166	+				-1.6
147,166	+				+0.6
147,166	+				-1.4
147,230	-				-0.8
147,343	+				-0.2
147,343	+				-0.4
147,344	+				-0.9
147,344	+				-1.0
147,350	-				+0.2
147,352	-				-0.6
147,352	-				-1.4
147,377	+				-1.7
147,396	-				-0.1
147,400	+				-1.6
147,400	+				+0.8
147,412	+				+1.3
147,452	-				-0.2
147,459	+				-0.1
147,459	+				-0.7
147,459	+				-0.3
147,459	+				-0.2
147,467	-				-0.7
147,467	-				-0.9
147,467	-				+0.3
147,467	-				-1.2
147,498	-				+0.2
147,505	+				-0.0
147,506	+				+0.7
147,509	+				-0.2
147,509	+				+0.2
147,513	-				+0.2
147,514	+				+0.9
147,516	-				-0.8
147,517	-				-1.5
147,530	+		SOA0159	0.12	-0.3
147,530	+		SOA0159	0.12	+0.6
147,530	+		SOA0159	0.12	+0.6
147,530	+		SOA0159	0.12	-1.8
147,532	-		SOA0159	0.12	-1.2
147,538	-		SOA0159	0.14	-0.1
147,541	+		SOA0159	0.15	-0.6
147,541	+		SOA0159	0.15	+0.1
147,549	-				-2.9
147,554	-		SOA0159	0.19	-0.4
147,554	-		SOA0159	0.19	-0.5
147,555	+		SOA0159	0.19	+0.8
147,565	+		SOA0159	0.22	-0.2
147,565	+		SOA0159	0.22	+0.4
147,565	+		SOA0159	0.22	+0.9
147,565	+		SOA0159	0.22	-0.7
147,565	+		SOA0159	0.22	+0.6
147,565	+		SOA0159	0.22	-0.2
147,565	+		SOA0159	0.22	-0.1
147,565	+		SOA0159	0.22	+0.3
147,573	-		SOA0159	0.25	-2.5
147,573	-		SOA0159	0.25	+0.4
147,573	-		SOA0159	0.25	-1.7
147,583	+		SOA0159	0.28	-0.3
147,583	+		SOA0159	0.28	-0.4
147,583	+		SOA0159	0.28	-0.3
147,588	+		SOA0159	0.29	+0.2
147,591	-		SOA0159	0.30	-0.7
147,591	-		SOA0159	0.30	-1.5
147,591	-		SOA0159	0.30	-0.9
147,591	-		SOA0159	0.30	+1.2
147,593	+		SOA0159	0.31	-0.1
147,605	-		SOA0159	0.35	-0.4
147,631	+		SOA0159	0.43	-0.8
147,631	+		SOA0159	0.43	+0.1
147,631	+		SOA0159	0.43	-0.1
147,634	-		SOA0159	0.43	-0.1
147,634	-		SOA0159	0.43	-0.0
147,636	+		SOA0159	0.44	+0.6
147,666	-		SOA0159	0.53	-0.1
147,727	+		SOA0159	0.72	+0.4
147,746	-		SOA0159	0.78	+0.1
147,763	-		SOA0159	0.83	-0.2
147,764	-		SOA0159	0.83	-1.8
147,771	+		SOA0159	0.85	-0.3
147,771	+		SOA0159	0.85	-0.6
147,777	+		SOA0159	0.87	+0.1
147,777	+		SOA0159	0.87	-1.1
147,777	+		SOA0159	0.87	+1.4
147,777	+		SOA0159	0.87	-0.6
147,777	+		SOA0159	0.87	-0.4
147,777	+		SOA0159	0.87	+1.0
147,777	+		SOA0159	0.87	-0.9
147,777	+		SOA0159	0.87	-0.7
147,777	+		SOA0159	0.87	-2.8
147,777	+		SOA0159	0.87	-0.1
147,777	+		SOA0159	0.87	+1.5
147,779	-		SOA0159	0.88	-0.7
147,779	-		SOA0159	0.88	-0.2
147,785	-		SOA0159	0.90	-1.1
147,785	-		SOA0159	0.90	+0.1
147,785	-		SOA0159	0.90	-0.1
147,790	+				+1.9
147,790	+				+0.1
147,793	+				-0.6
147,820	+				-0.4
147,820	+				-0.1
147,828	-				+0.4
147,850	+				-0.3
147,850	+				+0.5
147,850	+				+1.5
147,858	-				-1.2
147,858	-				-1.5
147,858	-				-1.1
147,858	-				-0.5
147,858	-				-0.6
147,863	+				+0.2
147,863	+				-0.3
147,863	+				-0.5
147,863	+				+1.3
147,871	-				+0.2
147,871	-				+1.8
147,922	-				+0.2
148,027	-				-0.7
148,027	-				-0.6
148,064	+				-0.1
148,073	-				-1.2
148,129	+				+0.8
148,129	+				+0.4
148,130	+				-0.9
148,130	+				-0.9
148,130	+				+0.1
148,138	-				+0.5
148,138	-				+0.3
148,138	-				-0.2
148,138	-				-0.5
148,138	-				-0.2
148,138	-				-0.7
148,153	+		SOA0160	0.11	-0.3
148,161	+		SOA0160	0.12	-1.6
148,161	+		SOA0160	0.12	+0.4
148,161	+		SOA0160	0.12	-0.5
148,161	-		SOA0160	0.12	-0.1
148,161	-		SOA0160	0.12	-0.5
148,161	-		SOA0160	0.12	-0.7
148,164	-		SOA0160	0.13	+0.0
148,164	-		SOA0160	0.13	+0.8
148,167	+		SOA0160	0.13	-1.3
148,167	+		SOA0160	0.13	-0.5
148,167	+		SOA0160	0.13	+0.0
148,167	+		SOA0160	0.13	-0.4
148,167	+		SOA0160	0.13	-0.1
148,167	+		SOA0160	0.13	-1.1
148,167	+		SOA0160	0.13	+0.7
148,167	+		SOA0160	0.13	+0.2
148,167	+		SOA0160	0.13	-0.2
148,167	+		SOA0160	0.13	-0.4
148,167	+		SOA0160	0.13	+1.8
148,167	+		SOA0160	0.13	+0.1
148,167	+		SOA0160	0.13	-0.2
148,167	+		SOA0160	0.13	-0.8
148,167	+		SOA0160	0.13	+0.8
148,167	+		SOA0160	0.13	-0.6
148,167	+		SOA0160	0.13	+0.5
148,167	+		SOA0160	0.13	-0.1
148,167	+		SOA0160	0.13	+1.4
148,167	+		SOA0160	0.13	-0.2
148,167	+		SOA0160	0.13	-0.3
148,167	+		SOA0160	0.13	-1.1
148,167	+		SOA0160	0.13	-0.1
148,167	+		SOA0160	0.13	-0.3
148,167	+		SOA0160	0.13	-0.0
148,167	+		SOA0160	0.13	+0.0
148,167	+		SOA0160	0.13	+0.4
148,167	+		SOA0160	0.13	+0.3
148,167	+		SOA0160	0.13	+1.3
148,167	+		SOA0160	0.13	-1.1
148,167	+		SOA0160	0.13	+0.3
148,167	+		SOA0160	0.13	+0.4
148,167	+		SOA0160	0.13	+2.1
148,167	+		SOA0160	0.13	-0.6
148,167	+		SOA0160	0.13	+1.5
148,167	+		SOA0160	0.13	-2.1
148,167	+		SOA0160	0.13	-1.4
148,167	+		SOA0160	0.13	-1.7
148,167	+		SOA0160	0.13	-0.5
148,167	+		SOA0160	0.13	-0.7
148,167	+		SOA0160	0.13	-0.6
148,167	+		SOA0160	0.13	-2.5
148,167	+		SOA0160	0.13	+0.2
148,167	+		SOA0160	0.13	+0.6
148,167	+		SOA0160	0.13	+0.3
148,167	+		SOA0160	0.13	-0.1
148,167	+		SOA0160	0.13	+0.3
148,167	+		SOA0160	0.13	+0.7
148,167	+		SOA0160	0.13	-0.3
148,167	+		SOA0160	0.13	-1.4
148,167	+		SOA0160	0.13	+0.6
148,167	+		SOA0160	0.13	+0.3
148,167	+		SOA0160	0.13	-0.4
148,167	+		SOA0160	0.13	+0.3
148,167	+		SOA0160	0.13	+0.2
148,167	+		SOA0160	0.13	+0.2
148,167	+		SOA0160	0.13	+0.0
148,167	+		SOA0160	0.13	-0.1
148,169	-		SOA0160	0.13	-0.5
148,169	-		SOA0160	0.13	-0.4
148,169	-		SOA0160	0.13	+0.7
148,169	-		SOA0160	0.13	+0.2
148,174	-		SOA0160	0.14	-0.4
148,175	-		SOA0160	0.14	-0.3
148,175	-		SOA0160	0.14	+0.2
148,175	-		SOA0160	0.14	-0.7
148,175	-		SOA0160	0.14	-0.0
148,175	-		SOA0160	0.14	-0.4
148,175	-		SOA0160	0.14	-0.8
148,175	-		SOA0160	0.14	-0.3
148,175	-		SOA0160	0.14	-0.6
148,175	-		SOA0160	0.14	-0.7
148,175	-		SOA0160	0.14	-1.2
148,175	-		SOA0160	0.14	-0.7
148,175	-		SOA0160	0.14	+0.8
148,175	-		SOA0160	0.14	+0.8
148,175	-		SOA0160	0.14	-0.1
148,175	-		SOA0160	0.14	-0.3
148,175	-		SOA0160	0.14	-0.0
148,175	-		SOA0160	0.14	+0.3
148,175	-		SOA0160	0.14	-0.9
148,175	-		SOA0160	0.14	+0.2
148,175	-		SOA0160	0.14	-0.2
148,175	-		SOA0160	0.14	-0.3
148,175	-		SOA0160	0.14	+2.7
148,175	-		SOA0160	0.14	+0.3
148,175	-		SOA0160	0.14	+0.8
148,175	-		SOA0160	0.14	+0.2
148,175	-		SOA0160	0.14	-2.3
148,175	-		SOA0160	0.14	+0.4
148,175	-		SOA0160	0.14	+0.0
148,175	-		SOA0160	0.14	-0.0
148,175	-		SOA0160	0.14	+0.3
148,175	-		SOA0160	0.14	-0.5
148,175	-		SOA0160	0.14	+0.4
148,175	-		SOA0160	0.14	-1.0
148,175	-		SOA0160	0.14	+0.3
148,175	-		SOA0160	0.14	+1.7
148,175	-		SOA0160	0.14	-0.9
148,175	-		SOA0160	0.14	-0.5
148,175	-		SOA0160	0.14	+0.3
148,175	-		SOA0160	0.14	-0.6
148,175	-		SOA0160	0.14	+0.6
148,175	-		SOA0160	0.14	-0.6
148,175	-		SOA0160	0.14	+0.8
148,175	-		SOA0160	0.14	-0.5
148,175	-		SOA0160	0.14	-0.2
148,175	-		SOA0160	0.14	-1.6
148,175	-		SOA0160	0.14	-1.2
148,175	-		SOA0160	0.14	-0.8
148,175	-		SOA0160	0.14	-0.2
148,175	-		SOA0160	0.14	-0.5
148,175	-		SOA0160	0.14	-0.3
148,175	-		SOA0160	0.14	+0.4
148,175	-		SOA0160	0.14	-0.0
148,175	-		SOA0160	0.14	+0.0
148,175	-		SOA0160	0.14	-1.5
148,175	-		SOA0160	0.14	+0.2
148,175	-		SOA0160	0.14	+0.0
148,175	-		SOA0160	0.14	-0.3
148,175	-		SOA0160	0.14	-0.3
148,175	-		SOA0160	0.14	-0.9
148,175	-		SOA0160	0.14	+0.1
148,175	-		SOA0160	0.14	-1.4
148,175	-		SOA0160	0.14	+1.3
148,175	-				-1.9
148,175	-		SOA0160	0.14	-0.1
148,175	-		SOA0160	0.14	-1.0
148,185	+		SOA0160	0.15	+0.4
148,185	+		SOA0160	0.15	-1.9
148,185	+		SOA0160	0.15	+0.6
148,193	-		SOA0160	0.16	+0.2
148,193	-		SOA0160	0.16	+1.3
148,195	+		SOA0160	0.16	-1.3
148,195	+		SOA0160	0.16	+1.3
148,200	+		SOA0160	0.17	-0.4
148,200	+		SOA0160	0.17	-2.7
148,200	+		SOA0160	0.17	+0.4
148,200	+		SOA0160	0.17	+0.6
148,200	+		SOA0160	0.17	-1.4
148,203	-		SOA0160	0.17	+0.0
148,208	-		SOA0160	0.18	+0.9
148,208	-		SOA0160	0.18	-0.8
148,208	-		SOA0160	0.18	-1.3
148,208	-		SOA0160	0.18	-0.2
148,208	-		SOA0160	0.18	+0.0
148,208	-		SOA0160	0.18	-1.4
148,243	-		SOA0160	0.22	-0.1
148,259	+		SOA0160	0.24	+0.2
148,300	+		SOA0160	0.29	-2.7
148,335	+		SOA0160	0.33	+0.3
148,388	+		SOA0160	0.39	+0.8
148,398	+		SOA0160	0.40	-0.3
148,407	+		SOA0160	0.42	+0.9
148,408	+		SOA0160	0.42	+0.2
148,411	-		SOA0160	0.42	-0.6
148,413	+		SOA0160	0.42	-0.5
148,413	+		SOA0160	0.42	+0.3
148,416	-		SOA0160	0.43	-0.0
148,421	-		SOA0160	0.43	+0.6
148,421	-		SOA0160	0.43	-0.5
148,468	-		SOA0160	0.49	+0.9
148,474	+		SOA0160	0.50	+0.0
148,527	+		SOA0160	0.56	-0.5
148,586	+		SOA0160	0.63	-0.7
148,603	+		SOA0160	0.65	+0.1
148,690	-		SOA0160	0.75	-0.3
148,695	-		SOA0160	0.76	-0.1
148,730	+		SOA0160	0.80	-0.3
148,738	-		SOA0160	0.81	-1.2
148,748	+		SOA0160	0.82	+0.7
148,748	+		SOA0160	0.82	-0.7
148,748	+		SOA0160	0.82	+1.1
148,748	+		SOA0160	0.82	-0.4
148,755	+		SOA0160	0.83	+0.1