Strain Fitness in Shewanella oneidensis MR-1 around SOA0098

Experiment: SBM - with RNA protect

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SBM - with RNA protect
76,571	+				-0.4
76,571	+				+0.1
76,574	+				+0.0
76,585	+				-0.1
76,609	+				-0.0
76,609	+				-1.7
76,609	+				-1.1
76,609	+				+0.3
76,612	-				-1.2
76,617	-				-0.5
76,617	-				-0.3
76,617	-				-0.4
76,617	-				+0.5
76,651	-				-0.2
76,653	-				+0.3
76,677	+				+0.5
76,677	+				+0.3
76,677	+				+1.7
76,677	+				+0.2
76,677	+				-0.8
76,677	+				-0.7
76,677	+				+0.1
76,677	+				+1.1
76,677	+				+0.2
76,685	-				+0.9
76,685	-				+0.3
76,741	-				-0.1
76,741	-				+0.1
76,756	+				+0.4
76,777	-				-0.3
76,784	+				-0.4
76,784	+				+1.1
76,784	+				+0.8
76,789	+				+0.1
76,790	+				+0.7
76,790	+				+0.2
76,790	+				-0.9
76,792	-				+0.6
76,792	-				+0.1
76,792	-				+0.0
76,798	-				+0.9
76,798	-				-0.4
76,798	-				+0.5
76,814	-				-0.0
76,852	-				-0.9
76,865	+				+0.9
76,868	-				+0.2
76,870	+				+0.2
76,870	+				-0.3
76,870	+				-0.0
76,870	+				+0.5
76,870	+				+0.8
76,870	+				+1.3
76,870	+				+0.1
76,870	+				-0.1
76,870	+				-0.4
76,870	+				-0.1
76,873	-				+0.5
76,878	-				-0.4
76,878	-				-0.3
76,878	-				+1.8
76,878	-				-1.1
76,879	+				-0.5
76,896	-				+0.1
76,901	+				+1.3
76,902	-				+1.7
76,919	-				-0.2
76,990	+				-0.2
76,998	-				-0.4
77,012	-				+0.2
77,012	-				-0.8
77,014	+				+1.3
77,022	-				-1.8
77,023	+				-0.6
77,026	+				-1.3
77,026	+				-0.5
77,034	-				-0.6
77,079	+		SOA0098	0.10	-1.5
77,079	-		SOA0098	0.10	-1.1
77,081	+		SOA0098	0.11	+0.8
77,125	+		SOA0098	0.22	+0.1
77,136	+		SOA0098	0.24	-0.2
77,136	+		SOA0098	0.24	-0.6
77,144	-		SOA0098	0.27	+1.1
77,149	-		SOA0098	0.28	+1.4
77,151	+		SOA0098	0.28	-1.3
77,156	+		SOA0098	0.30	-0.5
77,166	+		SOA0098	0.32	+0.3
77,172	+		SOA0098	0.34	-0.6
77,172	+		SOA0098	0.34	+1.4
77,172	+		SOA0098	0.34	+0.7
77,172	+		SOA0098	0.34	-0.7
77,172	+		SOA0098	0.34	+0.3
77,172	+		SOA0098	0.34	+1.1
77,172	+		SOA0098	0.34	+0.7
77,174	+		SOA0098	0.34	-0.7
77,174	+		SOA0098	0.34	+0.2
77,179	-		SOA0098	0.35	+0.8
77,180	-		SOA0098	0.36	+0.1
77,180	-		SOA0098	0.36	+0.3
77,180	-		SOA0098	0.36	+0.4
77,180	-		SOA0098	0.36	+0.3
77,180	-		SOA0098	0.36	-0.3
77,180	-		SOA0098	0.36	-0.4
77,180	-		SOA0098	0.36	+0.8
77,182	-		SOA0098	0.36	+0.5
77,182	-		SOA0098	0.36	-0.2
77,182	-		SOA0098	0.36	-0.1
77,185	+		SOA0098	0.37	+0.2
77,185	+		SOA0098	0.37	-0.4
77,185	+		SOA0098	0.37	-0.3
77,193	-		SOA0098	0.39	-2.3
77,193	-		SOA0098	0.39	-1.9
77,193	-		SOA0098	0.39	-0.3
77,193	-				+0.3
77,216	+		SOA0098	0.45	-1.4
77,221	+		SOA0098	0.46	-0.9
77,221	-		SOA0098	0.46	-1.9
77,221	-		SOA0098	0.46	-0.5
77,235	+		SOA0098	0.49	-0.5
77,247	-		SOA0098	0.53	-0.6
77,264	-		SOA0098	0.57	+0.0
77,383	+		SOA0098	0.87	+0.2
77,383	+		SOA0098	0.87	+1.0
77,392	+		SOA0098	0.89	+0.3
77,417	+				-1.2
77,430	-				-1.1
77,473	+				-0.3
77,474	-				-1.6
77,474	-				-0.7
77,475	-				+1.3
77,481	-				+0.7
77,580	+				+0.5
77,580	+				-1.5
77,593	+				+1.1
77,593	+				+0.1
77,601	-				-0.3
77,603	-				+0.3
77,608	-				-0.6
77,608	-				-0.4
77,609	-				+0.7
77,619	-				+0.8
77,627	-				+2.3
77,627	-				+0.2
77,702	+				+0.9
77,759	-				-0.9
77,844	-				+0.2
77,879	+				+0.3
77,881	-				-0.2
77,899	-		SOA0099	0.11	+1.2
77,904	-		SOA0099	0.11	-0.3
77,911	-		SOA0099	0.11	-0.9
77,915	+		SOA0099	0.12	-0.0
77,915	+		SOA0099	0.12	+0.5
77,915	+		SOA0099	0.12	+0.3
77,915	+		SOA0099	0.12	-1.4
77,915	+		SOA0099	0.12	+0.1
77,915	+		SOA0099	0.12	+0.7
77,915	+		SOA0099	0.12	-1.7
77,923	-		SOA0099	0.12	-2.0
77,923	-		SOA0099	0.12	-0.5
77,928	+		SOA0099	0.12	+0.9
77,938	+		SOA0099	0.13	-0.5
78,033	+		SOA0099	0.18	+0.1
78,034	-		SOA0099	0.19	+0.9
78,036	-		SOA0099	0.19	-0.6
78,038	+		SOA0099	0.19	+0.5
78,038	+		SOA0099	0.19	+0.9
78,038	+		SOA0099	0.19	-0.1
78,038	+		SOA0099	0.19	+0.2
78,038	+		SOA0099	0.19	-0.1
78,046	-		SOA0099	0.19	+0.6
78,046	-		SOA0099	0.19	+0.5
78,061	+		SOA0099	0.20	-0.3
78,063	-		SOA0099	0.20	-0.4
78,069	-		SOA0099	0.21	+0.1
78,086	+		SOA0099	0.22	-0.4
78,170	+		SOA0099	0.26	+0.2
78,170	+		SOA0099	0.26	+0.8
78,170	+		SOA0099	0.26	+0.2
78,170	+		SOA0099	0.26	+0.5
78,170	+		SOA0099	0.26	+0.1
78,178	-		SOA0099	0.27	+0.2
78,179	+		SOA0099	0.27	+0.2
78,197	-		SOA0099	0.28	+0.4
78,208	+				+1.5
78,213	-		SOA0099	0.29	+1.1
78,215	+		SOA0099	0.29	-0.1
78,216	+		SOA0099	0.29	+0.3
78,234	-		SOA0099	0.30	+0.6
78,248	+		SOA0099	0.31	+0.6
78,262	+		SOA0099	0.32	-3.9
78,262	+		SOA0099	0.32	-0.2
78,262	+		SOA0099	0.32	+0.3
78,262	+		SOA0099	0.32	-0.8
78,267	+		SOA0099	0.32	+0.9
78,270	-		SOA0099	0.32	+0.7
78,270	-		SOA0099	0.32	-0.2
78,280	+		SOA0099	0.33	+0.9
78,288	-		SOA0099	0.33	+0.4
78,288	-		SOA0099	0.33	-0.2
78,288	-		SOA0099	0.33	+1.5
78,288	-		SOA0099	0.33	+0.3
78,299	-		SOA0099	0.34	+0.5
78,299	-		SOA0099	0.34	+0.9
78,304	-		SOA0099	0.34	+0.2
78,304	-		SOA0099	0.34	+1.3
78,312	-		SOA0099	0.35	+0.2
78,368	-		SOA0099	0.38	+1.8
78,378	+		SOA0099	0.38	+0.1
78,378	+		SOA0099	0.38	+0.9
78,378	+		SOA0099	0.38	+0.3
78,378	+		SOA0099	0.38	+0.9
78,378	+		SOA0099	0.38	+3.3
78,383	+		SOA0099	0.39	+0.7
78,383	+		SOA0099	0.39	-1.4
78,383	+		SOA0099	0.39	+0.1
78,383	+		SOA0099	0.39	+0.1
78,386	-		SOA0099	0.39	-0.3
78,386	-		SOA0099	0.39	-0.3
78,391	-		SOA0099	0.39	+3.3
78,391	-		SOA0099	0.39	-0.4
78,391	-		SOA0099	0.39	-0.0
78,391	-		SOA0099	0.39	+0.8
78,391	-		SOA0099	0.39	+1.1
78,391	-		SOA0099	0.39	+0.4
78,391	-		SOA0099	0.39	-0.6
78,391	-		SOA0099	0.39	-0.6
78,391	-		SOA0099	0.39	-0.6
78,391	-		SOA0099	0.39	-0.9