Strain Fitness in Shewanella oneidensis MR-1 around SOA0086

Experiment: SBM - with RNA protect

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSO_A0180 and SOA0085 are separated by 336 nucleotidesSOA0085 and SOA0086 are separated by 83 nucleotidesSOA0086 and SOA0087 are separated by 169 nucleotidesSOA0087 and SOA0088 overlap by 1 nucleotidesSOA0088 and SO_A0089 are separated by 23 nucleotides SO_A0180: SO_A0180 - hypothetical protein (NCBI), at 65,042 to 65,569 _A0180 SOA0085: SOA0085 - ISSod8, transposase (NCBI ptt file), at 65,906 to 66,451 SOA0085 SOA0086: SOA0086 - site-specific recombinase, resolvase family (NCBI ptt file), at 66,535 to 67,125 SOA0086 SOA0087: SOA0087 - conserved hypothetical protein (NCBI ptt file), at 67,295 to 67,555 SOA0087 SOA0088: SOA0088 - plasmid stabilization protein ParE, putative (NCBI ptt file), at 67,555 to 67,866 SOA0088 SO_A0089: SO_A0089 - no description, at 67,890 to 72,206 _A0089 Position (kb) 66 67 68Strain fitness (log2 ratio) -2 -1 0 1 2at 65.537 kb on - strandat 65.537 kb on - strandat 65.595 kb on + strandat 65.608 kb on - strandat 65.614 kb on + strandat 65.614 kb on + strandat 65.622 kb on + strandat 65.622 kb on - strandat 65.622 kb on - strandat 65.622 kb on - strandat 65.624 kb on + strandat 65.624 kb on + strandat 65.631 kb on - strandat 65.632 kb on - strandat 65.632 kb on - strandat 65.676 kb on + strandat 65.676 kb on + strandat 65.685 kb on + strandat 65.690 kb on + strandat 66.278 kb on - strand, within SOA0085at 66.511 kb on + strandat 66.542 kb on + strandat 66.564 kb on + strandat 66.605 kb on - strand, within SOA0086at 66.608 kb on + strand, within SOA0086at 66.608 kb on + strand, within SOA0086at 66.608 kb on + strand, within SOA0086at 66.608 kb on + strand, within SOA0086at 66.608 kb on + strand, within SOA0086at 66.616 kb on - strand, within SOA0086at 66.616 kb on - strand, within SOA0086at 66.616 kb on - strand, within SOA0086at 66.616 kb on - strand, within SOA0086at 66.624 kb on - strand, within SOA0086at 66.636 kb on + strand, within SOA0086at 66.636 kb on + strand, within SOA0086at 66.636 kb on + strand, within SOA0086at 66.636 kb on + strand, within SOA0086at 66.636 kb on + strand, within SOA0086at 66.644 kb on - strand, within SOA0086at 66.644 kb on - strand, within SOA0086at 66.644 kb on - strand, within SOA0086at 66.644 kb on - strand, within SOA0086at 66.644 kb on - strand, within SOA0086at 66.644 kb on - strand, within SOA0086at 66.644 kb on - strand, within SOA0086at 66.644 kb on - strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.746 kb on + strand, within SOA0086at 66.746 kb on + strand, within SOA0086at 66.746 kb on + strand, within SOA0086at 66.753 kb on - strand, within SOA0086at 66.754 kb on - strand, within SOA0086at 66.754 kb on - strand, within SOA0086at 66.754 kb on - strand, within SOA0086at 66.754 kb on - strand, within SOA0086at 66.756 kb on + strand, within SOA0086at 66.756 kb on + strand, within SOA0086at 66.756 kb on + strand, within SOA0086at 66.764 kb on - strand, within SOA0086at 66.816 kb on - strand, within SOA0086at 66.822 kb on + strand, within SOA0086at 66.824 kb on + strand, within SOA0086at 66.832 kb on - strand, within SOA0086at 66.847 kb on - strand, within SOA0086at 66.886 kb on + strand, within SOA0086at 66.895 kb on + strand, within SOA0086at 66.895 kb on + strand, within SOA0086at 66.903 kb on - strand, within SOA0086at 66.907 kb on + strand, within SOA0086at 66.907 kb on + strand, within SOA0086at 66.915 kb on - strand, within SOA0086at 66.915 kb on - strand, within SOA0086at 66.915 kb on - strand, within SOA0086at 66.948 kb on - strand, within SOA0086at 66.949 kb on - strand, within SOA0086at 66.960 kb on - strand, within SOA0086at 66.960 kb on - strand, within SOA0086at 66.960 kb on - strand, within SOA0086at 66.997 kb on + strand, within SOA0086at 66.999 kb on + strand, within SOA0086at 67.074 kb on - strandat 67.076 kb on + strandat 67.081 kb on + strandat 67.081 kb on + strandat 67.081 kb on + strandat 67.081 kb on + strandat 67.081 kb on + strandat 67.081 kb on + strandat 67.082 kb on - strandat 67.089 kb on - strandat 67.089 kb on - strandat 67.089 kb on - strandat 67.091 kb on + strandat 67.091 kb on + strandat 67.099 kb on + strandat 67.102 kb on - strandat 67.105 kb on + strandat 67.510 kb on + strand, within SOA0087at 67.536 kb on + strandat 67.536 kb on + strandat 67.544 kb on - strandat 67.565 kb on + strandat 67.579 kb on + strandat 67.580 kb on + strandat 67.594 kb on + strand, within SOA0088at 67.594 kb on + strand, within SOA0088at 67.597 kb on - strand, within SOA0088at 67.599 kb on + strand, within SOA0088at 67.602 kb on - strand, within SOA0088at 67.606 kb on + strand, within SOA0088at 67.626 kb on - strand, within SOA0088at 67.632 kb on - strand, within SOA0088at 67.642 kb on - strand, within SOA0088at 67.762 kb on - strand, within SOA0088at 67.831 kb on - strand, within SOA0088at 67.840 kb on - strandat 67.851 kb on + strandat 67.859 kb on - strandat 67.859 kb on - strandat 67.860 kb on + strandat 67.868 kb on - strandat 67.868 kb on - strandat 67.869 kb on - strandat 67.875 kb on + strandat 67.875 kb on + strandat 67.883 kb on - strandat 67.986 kb on - strandat 67.990 kb on + strandat 67.990 kb on + strandat 67.990 kb on + strandat 67.990 kb on + strandat 67.990 kb on + strandat 67.998 kb on - strandat 67.998 kb on - strandat 67.998 kb on - strandat 67.998 kb on - strandat 68.007 kb on + strandat 68.017 kb on - strandat 68.019 kb on + strandat 68.032 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction SBM - with RNA protect
remove
65,537 - -0.2
65,537 - +0.0
65,595 + -0.3
65,608 - -0.4
65,614 + +0.4
65,614 + +0.3
65,622 + +0.7
65,622 - +0.4
65,622 - +0.1
65,622 - -0.7
65,624 + -1.0
65,624 + +0.9
65,631 - +0.4
65,632 - +0.7
65,632 - +0.3
65,676 + +1.1
65,676 + -0.1
65,685 + +0.8
65,690 + -1.1
66,278 - SOA0085 0.68 +0.7
66,511 + +0.9
66,542 + -0.7
66,564 + -0.5
66,605 - SOA0086 0.12 -1.2
66,608 + SOA0086 0.12 +0.4
66,608 + SOA0086 0.12 -1.5
66,608 + SOA0086 0.12 -0.8
66,608 + SOA0086 0.12 -0.8
66,608 + SOA0086 0.12 -0.4
66,616 - SOA0086 0.14 -1.3
66,616 - SOA0086 0.14 +0.9
66,616 - SOA0086 0.14 +0.1
66,616 - SOA0086 0.14 -0.5
66,624 - SOA0086 0.15 +1.0
66,636 + SOA0086 0.17 -0.7
66,636 + SOA0086 0.17 -0.1
66,636 + SOA0086 0.17 -0.6
66,636 + SOA0086 0.17 -0.2
66,636 + SOA0086 0.17 -0.5
66,644 - SOA0086 0.18 +0.1
66,644 - SOA0086 0.18 +0.3
66,644 - SOA0086 0.18 +0.5
66,644 - SOA0086 0.18 -0.6
66,644 - SOA0086 0.18 -1.6
66,644 - SOA0086 0.18 +1.1
66,644 - SOA0086 0.18 +0.3
66,644 - SOA0086 0.18 -1.4
66,678 + SOA0086 0.24 +1.3
66,678 + SOA0086 0.24 -2.5
66,678 + SOA0086 0.24 -0.1
66,678 + SOA0086 0.24 +2.7
66,678 + SOA0086 0.24 -1.2
66,678 + SOA0086 0.24 +0.5
66,678 + SOA0086 0.24 +0.0
66,678 + SOA0086 0.24 -0.3
66,678 + SOA0086 0.24 +0.9
66,678 + SOA0086 0.24 +0.2
66,678 + SOA0086 0.24 -1.5
66,678 + SOA0086 0.24 +1.2
66,678 + SOA0086 0.24 -1.4
66,678 + SOA0086 0.24 -0.7
66,678 + SOA0086 0.24 -0.3
66,678 + SOA0086 0.24 +0.4
66,678 + SOA0086 0.24 -0.1
66,678 + SOA0086 0.24 -0.7
66,678 + SOA0086 0.24 -1.2
66,678 + SOA0086 0.24 -0.6
66,678 + SOA0086 0.24 -0.6
66,678 + SOA0086 0.24 -0.7
66,678 + SOA0086 0.24 +0.2
66,678 + SOA0086 0.24 -1.0
66,678 + SOA0086 0.24 +0.1
66,678 + SOA0086 0.24 -0.3
66,678 + SOA0086 0.24 -0.2
66,678 + SOA0086 0.24 -0.4
66,686 - SOA0086 0.26 +0.1
66,686 - SOA0086 0.26 +1.0
66,686 - SOA0086 0.26 -1.8
66,686 - SOA0086 0.26 +0.1
66,686 - SOA0086 0.26 +0.1
66,686 - SOA0086 0.26 -0.2
66,686 - SOA0086 0.26 -1.0
66,686 - SOA0086 0.26 +0.2
66,686 - SOA0086 0.26 -0.4
66,686 - SOA0086 0.26 -0.9
66,686 - SOA0086 0.26 -0.0
66,686 - SOA0086 0.26 +0.3
66,686 - SOA0086 0.26 -0.5
66,686 - SOA0086 0.26 -0.7
66,686 - SOA0086 0.26 +0.0
66,686 - SOA0086 0.26 +0.5
66,686 - SOA0086 0.26 +1.7
66,686 - SOA0086 0.26 +1.0
66,686 - SOA0086 0.26 -0.4
66,686 - SOA0086 0.26 -0.5
66,686 - SOA0086 0.26 -0.8
66,686 - SOA0086 0.26 -0.7
66,746 + SOA0086 0.36 +0.6
66,746 + SOA0086 0.36 +0.1
66,746 + SOA0086 0.36 -1.3
66,753 - SOA0086 0.37 -0.3
66,754 - SOA0086 0.37 -2.0
66,754 - SOA0086 0.37 +0.6
66,754 - SOA0086 0.37 -0.2
66,754 - SOA0086 0.37 -0.2
66,756 + SOA0086 0.37 -0.6
66,756 + SOA0086 0.37 -1.2
66,756 + SOA0086 0.37 -0.4
66,764 - SOA0086 0.39 +1.1
66,816 - SOA0086 0.48 +1.5
66,822 + SOA0086 0.49 -2.7
66,824 + SOA0086 0.49 -0.4
66,832 - SOA0086 0.50 -0.3
66,847 - SOA0086 0.53 -0.2
66,886 + SOA0086 0.59 -0.2
66,895 + SOA0086 0.61 -0.0
66,895 + SOA0086 0.61 +0.9
66,903 - SOA0086 0.62 -0.5
66,907 + SOA0086 0.63 -1.2
66,907 + SOA0086 0.63 -0.6
66,915 - SOA0086 0.64 +1.0
66,915 - SOA0086 0.64 +1.9
66,915 - SOA0086 0.64 +0.6
66,948 - SOA0086 0.70 +0.6
66,949 - SOA0086 0.70 -1.5
66,960 - SOA0086 0.72 +0.2
66,960 - SOA0086 0.72 -0.6
66,960 - SOA0086 0.72 +0.4
66,997 + SOA0086 0.78 -0.2
66,999 + SOA0086 0.79 -0.6
67,074 - -0.1
67,076 + -1.9
67,081 + +0.5
67,081 + -0.8
67,081 + -0.8
67,081 + -0.5
67,081 + +0.2
67,081 + -0.2
67,082 - +1.0
67,089 - +0.7
67,089 - -0.3
67,089 - -0.3
67,091 + -1.9
67,091 + -0.3
67,099 + +0.1
67,102 - +0.9
67,105 + -0.4
67,510 + SOA0087 0.82 +1.5
67,536 + +1.0
67,536 + +0.1
67,544 - -1.3
67,565 + -0.2
67,579 + +0.5
67,580 + -1.3
67,594 + SOA0088 0.12 +0.6
67,594 + SOA0088 0.12 +0.8
67,597 - SOA0088 0.13 -0.0
67,599 + SOA0088 0.14 +0.9
67,602 - SOA0088 0.15 +0.5
67,606 + SOA0088 0.16 -0.0
67,626 - SOA0088 0.23 -0.5
67,632 - SOA0088 0.25 -1.6
67,642 - SOA0088 0.28 -2.0
67,762 - SOA0088 0.66 -0.9
67,831 - SOA0088 0.88 -0.3
67,840 - +0.6
67,851 + +0.0
67,859 - +0.2
67,859 - -0.3
67,860 + -1.7
67,868 - +0.6
67,868 - +0.5
67,869 - -0.2
67,875 + +0.6
67,875 + -0.1
67,883 - +0.5
67,986 - -0.2
67,990 + +0.5
67,990 + +0.8
67,990 + +0.5
67,990 + +0.8
67,990 + +0.3
67,998 - +0.0
67,998 - +0.9
67,998 - -0.4
67,998 - +0.6
68,007 + +0.1
68,017 - +0.0
68,019 + +1.5
68,032 - +0.6

Or see this region's nucleotide sequence