Strain Fitness in Shewanella oneidensis MR-1 around SO2077

Experiment: SBM - with RNA protect

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SBM - with RNA protect
2,172,810	-		SO2075	0.36	-1.5
2,172,890	-		SO2075	0.46	+0.3
2,172,896	+		SO2075	0.46	+0.2
2,172,920	-		SO2075	0.49	-0.2
2,172,932	+		SO2075	0.51	-0.1
2,172,932	+		SO2075	0.51	+1.0
2,172,933	+		SO2075	0.51	+0.8
2,172,934	+		SO2075	0.51	+0.9
2,172,934	-		SO2075	0.51	-0.4
2,172,941	-		SO2075	0.52	-0.8
2,172,941	-		SO2075	0.52	+0.7
2,172,941	-		SO2075	0.52	+1.0
2,172,941	-		SO2075	0.52	+0.9
2,172,953	+		SO2075	0.53	-1.4
2,172,953	+		SO2075	0.53	-0.8
2,172,953	+		SO2075	0.53	+0.8
2,172,954	+		SO2075	0.53	-0.6
2,172,981	+		SO2075	0.57	+1.0
2,172,981	+		SO2075	0.57	-0.0
2,172,981	+		SO2075	0.57	+1.1
2,172,981	+		SO2075	0.57	+0.2
2,172,981	+		SO2075	0.57	-1.9
2,172,981	+		SO2075	0.57	+1.3
2,172,981	+		SO2075	0.57	+0.1
2,172,981	+		SO2075	0.57	-0.4
2,172,981	+		SO2075	0.57	+0.6
2,172,981	+		SO2075	0.57	+0.3
2,172,981	+		SO2075	0.57	-1.2
2,172,981	+		SO2075	0.57	-1.2
2,172,981	+		SO2075	0.57	+0.2
2,172,981	+		SO2075	0.57	-1.0
2,172,981	+		SO2075	0.57	+0.2
2,172,981	+		SO2075	0.57	-0.1
2,172,981	+		SO2075	0.57	+0.3
2,172,981	+		SO2075	0.57	+0.3
2,172,981	+		SO2075	0.57	+0.8
2,172,981	+		SO2075	0.57	+1.0
2,172,982	+		SO2075	0.57	-0.8
2,172,982	+		SO2075	0.57	+0.7
2,172,982	+		SO2075	0.57	+0.1
2,172,982	+		SO2075	0.57	+2.7
2,172,982	+		SO2075	0.57	-1.1
2,172,982	+		SO2075	0.57	+0.4
2,172,982	+		SO2075	0.57	+0.6
2,172,982	+		SO2075	0.57	-0.0
2,172,982	+		SO2075	0.57	+0.2
2,172,982	+		SO2075	0.57	+0.0
2,172,987	+		SO2075	0.57	+1.0
2,172,988	-		SO2075	0.57	-0.2
2,172,988	-		SO2075	0.57	-1.5
2,172,988	-		SO2075	0.57	-0.7
2,172,988	-		SO2075	0.57	+0.7
2,172,988	-		SO2075	0.57	+1.1
2,172,988	-		SO2075	0.57	-0.6
2,172,988	-		SO2075	0.57	+0.7
2,172,988	-		SO2075	0.57	+0.0
2,172,988	-		SO2075	0.57	-0.7
2,172,988	-		SO2075	0.57	-0.9
2,172,988	-		SO2075	0.57	-1.0
2,172,988	-		SO2075	0.57	+1.3
2,172,988	-		SO2075	0.57	+0.3
2,172,988	-		SO2075	0.57	+1.5
2,172,988	-		SO2075	0.57	-0.5
2,172,988	-		SO2075	0.57	-1.5
2,172,988	-		SO2075	0.57	+1.3
2,172,988	-		SO2075	0.57	+1.3
2,172,988	-		SO2075	0.57	-0.1
2,172,988	-		SO2075	0.57	-0.0
2,172,990	-		SO2075	0.58	+1.6
2,172,990	-		SO2075	0.58	-0.2
2,172,990	-		SO2075	0.58	-0.9
2,172,990	-		SO2075	0.58	+0.5
2,172,990	-		SO2075	0.58	+0.7
2,172,990	-		SO2075	0.58	+1.9
2,172,990	-		SO2075	0.58	+0.2
2,172,990	-		SO2075	0.58	+0.7
2,172,990	-		SO2075	0.58	-1.5
2,172,990	-		SO2075	0.58	-1.3
2,172,990	-		SO2075	0.58	+0.2
2,172,990	-		SO2075	0.58	-0.1
2,172,995	+		SO2075	0.58	+0.7
2,172,997	-		SO2075	0.58	+0.0
2,173,010	-		SO2075	0.60	+1.5
2,173,010	-		SO2075	0.60	+0.5
2,173,036	+		SO2075	0.63	-1.7
2,173,036	+		SO2075	0.63	+0.1
2,173,036	+		SO2075	0.63	-0.2
2,173,071	+		SO2075	0.67	-2.1
2,173,090	-		SO2075	0.70	-1.6
2,173,090	-		SO2075	0.70	+0.6
2,173,092	+		SO2075	0.70	-1.3
2,173,167	-		SO2075	0.79	-0.9
2,173,167	-		SO2075	0.79	+0.4
2,173,167	-		SO2075	0.79	+0.6
2,173,169	+		SO2075	0.79	-0.4
2,173,177	-		SO2075	0.80	+0.8
2,173,201	-		SO2075	0.83	-0.2
2,173,220	+		SO2075	0.85	-0.5
2,173,245	+		SO2075	0.88	-1.2
2,173,284	+				+0.1
2,173,285	+				-0.2
2,173,340	+				-0.7
2,173,348	-				-0.9
2,173,359	-				+0.0
2,173,413	-				+0.1
2,173,421	-				-2.8
2,173,434	+				-1.1
2,173,437	-				+1.4
2,173,444	+		SO2076	0.11	-0.7
2,173,456	+		SO2076	0.15	-0.3
2,173,462	-		SO2076	0.17	+0.6
2,173,469	-		SO2076	0.19	-0.4
2,173,486	+		SO2076	0.24	+0.1
2,173,496	+		SO2076	0.27	-0.4
2,173,496	+		SO2076	0.27	+0.9
2,173,496	+		SO2076	0.27	-0.9
2,173,499	-		SO2076	0.28	+0.6
2,173,501	+		SO2076	0.29	-0.1
2,173,501	+		SO2076	0.29	+0.4
2,173,501	+		SO2076	0.29	-0.4
2,173,504	-		SO2076	0.30	+0.9
2,173,504	-		SO2076	0.30	+1.3
2,173,504	-		SO2076	0.30	-0.8
2,173,504	-		SO2076	0.30	-0.1
2,173,508	+		SO2076	0.31	+0.3
2,173,516	-		SO2076	0.33	+1.6
2,173,516	-		SO2076	0.33	-0.7
2,173,551	+		SO2076	0.44	-0.3
2,173,551	+		SO2076	0.44	+0.5
2,173,552	+		SO2076	0.44	+0.7
2,173,552	-		SO2076	0.44	+0.3
2,173,591	+		SO2076	0.56	-0.5
2,173,625	-		SO2076	0.67	-0.2
2,173,625	-		SO2076	0.67	+0.5
2,173,635	-		SO2076	0.70	-0.2
2,173,638	+		SO2076	0.71	+1.1
2,173,638	+		SO2076	0.71	+0.1
2,173,638	+		SO2076	0.71	-0.7
2,173,638	+		SO2076	0.71	+0.0
2,173,638	+		SO2076	0.71	+0.1
2,173,638	+		SO2076	0.71	-1.2
2,173,646	-		SO2076	0.73	-0.5
2,173,646	-		SO2076	0.73	-1.3
2,173,646	-		SO2076	0.73	+0.6
2,173,646	-		SO2076	0.73	-0.4
2,173,646	-		SO2076	0.73	-1.2
2,173,646	-		SO2076	0.73	+0.3
2,173,649	+		SO2076	0.74	-1.8
2,173,649	+		SO2076	0.74	+0.7
2,173,649	+		SO2076	0.74	-0.6
2,173,650	+		SO2076	0.74	-0.5
2,173,650	+		SO2076	0.74	+1.4
2,173,650	+		SO2076	0.74	+0.1
2,173,650	+		SO2076	0.74	+0.0
2,173,650	+		SO2076	0.74	+0.2
2,173,650	+		SO2076	0.74	-0.0
2,173,650	+		SO2076	0.74	-0.4
2,173,650	+		SO2076	0.74	+1.7
2,173,650	+		SO2076	0.74	+0.3
2,173,650	+		SO2076	0.74	+0.0
2,173,650	+		SO2076	0.74	+0.9
2,173,650	+		SO2076	0.74	+0.0
2,173,650	+		SO2076	0.74	+0.2
2,173,650	+		SO2076	0.74	+0.7
2,173,650	+		SO2076	0.74	+0.5
2,173,650	+		SO2076	0.74	+0.5
2,173,650	+		SO2076	0.74	-0.5
2,173,650	+		SO2076	0.74	+0.4
2,173,650	+		SO2076	0.74	-0.2
2,173,650	+		SO2076	0.74	-1.2
2,173,650	+		SO2076	0.74	+1.0
2,173,650	+		SO2076	0.74	+0.0
2,173,650	+		SO2076	0.74	-0.1
2,173,650	+		SO2076	0.74	+1.0
2,173,650	+		SO2076	0.74	-2.5
2,173,650	+		SO2076	0.74	-0.4
2,173,650	+		SO2076	0.74	+0.9
2,173,650	+		SO2076	0.74	-0.7
2,173,650	+		SO2076	0.74	-1.1
2,173,650	+		SO2076	0.74	-0.3
2,173,650	+		SO2076	0.74	+0.4
2,173,650	+		SO2076	0.74	+0.7
2,173,650	+		SO2076	0.74	+0.5
2,173,650	+		SO2076	0.74	+0.4
2,173,650	+		SO2076	0.74	+0.0
2,173,657	+		SO2076	0.76	-0.2
2,173,657	+		SO2076	0.76	-0.8
2,173,657	+		SO2076	0.76	+0.4
2,173,657	+		SO2076	0.76	-0.3
2,173,658	+		SO2076	0.77	-0.9
2,173,658	-		SO2076	0.77	-1.7
2,173,658	-		SO2076	0.77	+0.5
2,173,658	-		SO2076	0.77	+1.2
2,173,658	-		SO2076	0.77	+1.1
2,173,658	-		SO2076	0.77	+0.3
2,173,658	-		SO2076	0.77	-0.8
2,173,658	-		SO2076	0.77	+3.1
2,173,658	-		SO2076	0.77	-1.4
2,173,658	-		SO2076	0.77	+0.6
2,173,658	-		SO2076	0.77	+0.5
2,173,658	-		SO2076	0.77	-0.3
2,173,658	-		SO2076	0.77	+0.1
2,173,658	-		SO2076	0.77	-0.2
2,173,658	-		SO2076	0.77	+0.7
2,173,658	-		SO2076	0.77	+0.3
2,173,658	-		SO2076	0.77	+0.1
2,173,658	-		SO2076	0.77	-0.6
2,173,658	-		SO2076	0.77	+0.6
2,173,658	-		SO2076	0.77	-0.3
2,173,658	-		SO2076	0.77	-0.7
2,173,658	-		SO2076	0.77	-0.8
2,173,658	-		SO2076	0.77	+0.5
2,173,658	-		SO2076	0.77	+0.0
2,173,658	-		SO2076	0.77	-0.5
2,173,665	-		SO2076	0.79	+0.3
2,173,665	-		SO2076	0.79	-2.6
2,173,665	-		SO2076	0.79	+0.1
2,173,665	-		SO2076	0.79	-1.0
2,173,665	-		SO2076	0.79	+0.3
2,173,665	-		SO2076	0.79	-2.4
2,173,665	-		SO2076	0.79	-0.8
2,173,667	+		SO2076	0.80	+0.8
2,173,667	+		SO2076	0.80	-0.7
2,173,670	-		SO2076	0.80	+0.0
2,173,675	-		SO2076	0.82	-1.6
2,173,675	-		SO2076	0.82	+0.0
2,173,706	-				-1.8
2,173,706	-				-1.4
2,173,720	+				-0.8
2,173,724	-				-0.5
2,173,724	-				+1.3
2,173,757	+				-0.2
2,173,808	+				+0.1
2,173,811	+				+0.9
2,173,816	-				-0.3
2,173,819	-				-0.8
2,173,820	-				+0.4
2,173,822	+				+0.4
2,173,822	+				+0.4
2,173,822	+				-0.3
2,173,822	+				-0.2
2,173,822	+				-0.7
2,173,822	+				+0.6
2,173,830	-				-0.2
2,173,830	-				-0.2
2,173,830	-				-0.5
2,173,830	-				+0.5
2,173,830	-				+0.6
2,173,830	-				-0.4
2,173,830	-				+0.2
2,173,879	+		SO2077	0.22	+0.3
2,173,879	+		SO2077	0.22	-0.1
2,173,879	+		SO2077	0.22	+0.3
2,173,884	+		SO2077	0.23	-0.9
2,173,884	+		SO2077	0.23	-0.7
2,173,884	+		SO2077	0.23	-0.9
2,173,884	+		SO2077	0.23	+1.3
2,173,884	+		SO2077	0.23	-0.1
2,173,887	-		SO2077	0.24	+0.7
2,173,887	-		SO2077	0.24	-0.9
2,173,891	+		SO2077	0.25	+1.1
2,173,891	+		SO2077	0.25	+0.3
2,173,892	-		SO2077	0.25	-0.2
2,173,892	-		SO2077	0.25	+0.0
2,173,892	-		SO2077	0.25	+0.3
2,173,892	-		SO2077	0.25	+0.0
2,173,892	-		SO2077	0.25	-0.3
2,173,892	-		SO2077	0.25	+1.6
2,173,892	-		SO2077	0.25	-0.4
2,173,899	+		SO2077	0.27	-2.0
2,173,899	-		SO2077	0.27	-0.5
2,173,991	-		SO2077	0.52	+0.2
2,173,991	-		SO2077	0.52	-1.7
2,174,014	+		SO2077	0.58	-1.0
2,174,022	-		SO2077	0.60	-0.2
2,174,034	-		SO2077	0.63	-0.6
2,174,034	-		SO2077	0.63	-0.7
2,174,034	-		SO2077	0.63	-2.7
2,174,058	+		SO2077	0.69	-0.3
2,174,106	+		SO2077	0.82	+0.4
2,174,114	-		SO2077	0.84	+0.3
2,174,114	-		SO2077	0.84	-0.6
2,174,166	-				-0.1
2,174,166	-				+0.6