Strain Fitness in Shewanella oneidensis MR-1 around SO0679

Experiment: SBM - with RNA protect

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0676 and SO0677 are separated by 2 nucleotidesSO0677 and SO0678 overlap by 1 nucleotidesSO0678 and SO0679 are separated by 28 nucleotidesSO0679 and SO0680 are separated by 119 nucleotides SO0676: SO0676 - conserved hypothetical protein (NCBI ptt file), at 694,394 to 694,840 SO0676 SO0677: SO0677 - conserved hypothetical protein (NCBI ptt file), at 694,843 to 695,283 SO0677 SO0678: SO0678 - hypothetical protein (NCBI ptt file), at 695,283 to 695,726 SO0678 SO0679: SO0679 - hypothetical protein (NCBI ptt file), at 695,755 to 696,501 SO0679 SO0680: SO0680 - hypothetical protein (NCBI ptt file), at 696,621 to 700,547 SO0680 Position (kb) 695 696 697Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 694.785 kb on - strand, within SO0676at 694.862 kb on - strandat 694.872 kb on - strandat 694.899 kb on + strand, within SO0677at 694.899 kb on + strand, within SO0677at 694.907 kb on - strand, within SO0677at 694.907 kb on - strand, within SO0677at 694.909 kb on - strand, within SO0677at 694.921 kb on + strand, within SO0677at 695.102 kb on + strand, within SO0677at 695.102 kb on + strand, within SO0677at 695.110 kb on - strand, within SO0677at 695.110 kb on - strand, within SO0677at 695.110 kb on - strand, within SO0677at 695.157 kb on + strand, within SO0677at 695.157 kb on + strand, within SO0677at 695.182 kb on - strand, within SO0677at 695.182 kb on - strand, within SO0677at 695.266 kb on + strandat 695.280 kb on - strandat 695.322 kb on + strandat 695.322 kb on + strandat 695.330 kb on - strand, within SO0678at 695.330 kb on - strand, within SO0678at 695.406 kb on - strand, within SO0678at 695.406 kb on - strand, within SO0678at 695.459 kb on + strand, within SO0678at 695.499 kb on - strand, within SO0678at 695.501 kb on + strand, within SO0678at 695.509 kb on - strand, within SO0678at 695.509 kb on - strand, within SO0678at 695.514 kb on + strand, within SO0678at 695.561 kb on - strand, within SO0678at 695.591 kb on - strand, within SO0678at 695.602 kb on - strand, within SO0678at 695.636 kb on + strand, within SO0678at 695.636 kb on + strand, within SO0678at 695.644 kb on - strand, within SO0678at 695.677 kb on + strand, within SO0678at 695.678 kb on + strand, within SO0678at 695.917 kb on + strand, within SO0679at 695.924 kb on - strand, within SO0679at 695.925 kb on - strand, within SO0679at 696.035 kb on + strand, within SO0679at 696.055 kb on + strand, within SO0679at 696.063 kb on - strand, within SO0679at 696.086 kb on - strand, within SO0679at 696.113 kb on + strand, within SO0679at 696.146 kb on + strand, within SO0679at 696.146 kb on + strand, within SO0679at 696.146 kb on + strand, within SO0679at 696.146 kb on + strand, within SO0679at 696.146 kb on + strand, within SO0679at 696.146 kb on + strand, within SO0679at 696.146 kb on + strand, within SO0679at 696.146 kb on + strand, within SO0679at 696.146 kb on + strand, within SO0679at 696.146 kb on + strand, within SO0679at 696.146 kb on + strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.154 kb on - strand, within SO0679at 696.179 kb on - strand, within SO0679at 696.196 kb on - strand, within SO0679at 696.216 kb on + strand, within SO0679at 696.242 kb on + strand, within SO0679at 696.255 kb on - strand, within SO0679at 696.260 kb on - strand, within SO0679at 696.295 kb on + strand, within SO0679at 696.303 kb on - strand, within SO0679at 696.394 kb on + strand, within SO0679at 696.535 kb on - strandat 696.712 kb on - strandat 696.753 kb on + strandat 696.837 kb on - strandat 696.872 kb on - strandat 696.897 kb on + strandat 696.900 kb on - strandat 696.921 kb on - strandat 696.928 kb on + strandat 696.929 kb on - strandat 696.977 kb on + strandat 696.978 kb on + strandat 697.023 kb on + strand, within SO0680at 697.036 kb on + strand, within SO0680at 697.108 kb on + strand, within SO0680at 697.108 kb on + strand, within SO0680at 697.108 kb on + strand, within SO0680at 697.108 kb on + strand, within SO0680at 697.108 kb on + strand, within SO0680at 697.108 kb on + strand, within SO0680at 697.108 kb on + strand, within SO0680at 697.108 kb on + strand, within SO0680at 697.108 kb on + strand, within SO0680at 697.108 kb on + strand, within SO0680at 697.116 kb on - strand, within SO0680at 697.116 kb on - strand, within SO0680at 697.116 kb on - strand, within SO0680at 697.183 kb on + strand, within SO0680at 697.199 kb on + strand, within SO0680at 697.236 kb on - strand, within SO0680at 697.282 kb on + strand, within SO0680at 697.282 kb on + strand, within SO0680at 697.283 kb on - strand, within SO0680at 697.290 kb on - strand, within SO0680at 697.387 kb on + strand, within SO0680at 697.395 kb on - strand, within SO0680at 697.416 kb on - strand, within SO0680at 697.475 kb on - strand, within SO0680

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Per-strain Table

Position Strand Gene LocusTag Fraction SBM - with RNA protect
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694,785 - SO0676 0.87 +0.3
694,862 - -0.4
694,872 - -0.5
694,899 + SO0677 0.13 +0.7
694,899 + SO0677 0.13 -0.2
694,907 - SO0677 0.15 -0.1
694,907 - SO0677 0.15 +0.9
694,909 - SO0677 0.15 +1.3
694,921 + SO0677 0.18 +0.4
695,102 + SO0677 0.59 -0.6
695,102 + SO0677 0.59 +0.8
695,110 - SO0677 0.61 +0.2
695,110 - SO0677 0.61 +1.1
695,110 - SO0677 0.61 -0.3
695,157 + SO0677 0.71 +1.3
695,157 + SO0677 0.71 +0.6
695,182 - SO0677 0.77 +0.8
695,182 - SO0677 0.77 +0.7
695,266 + -0.2
695,280 - -1.1
695,322 + -0.2
695,322 + -0.0
695,330 - SO0678 0.11 -1.6
695,330 - SO0678 0.11 +0.8
695,406 - SO0678 0.28 -0.6
695,406 - SO0678 0.28 -0.1
695,459 + SO0678 0.40 +0.3
695,499 - SO0678 0.49 -0.4
695,501 + SO0678 0.49 -0.0
695,509 - SO0678 0.51 +0.9
695,509 - SO0678 0.51 -0.9
695,514 + SO0678 0.52 +1.3
695,561 - SO0678 0.63 +0.4
695,591 - SO0678 0.69 -0.1
695,602 - SO0678 0.72 +0.6
695,636 + SO0678 0.80 +0.6
695,636 + SO0678 0.80 +0.3
695,644 - SO0678 0.81 -1.2
695,677 + SO0678 0.89 -1.8
695,678 + SO0678 0.89 -0.7
695,917 + SO0679 0.22 +0.4
695,924 - SO0679 0.23 -0.3
695,925 - SO0679 0.23 +0.1
696,035 + SO0679 0.37 -0.6
696,055 + SO0679 0.40 -0.9
696,063 - SO0679 0.41 -1.0
696,086 - SO0679 0.44 -1.0
696,113 + SO0679 0.48 -0.3
696,146 + SO0679 0.52 -1.0
696,146 + SO0679 0.52 -0.0
696,146 + SO0679 0.52 -0.3
696,146 + SO0679 0.52 +0.3
696,146 + SO0679 0.52 +0.1
696,146 + SO0679 0.52 -0.4
696,146 + SO0679 0.52 -0.5
696,146 + SO0679 0.52 -1.4
696,146 + SO0679 0.52 +0.2
696,146 + SO0679 0.52 -0.6
696,146 + SO0679 0.52 +1.1
696,154 - SO0679 0.53 +1.5
696,154 - SO0679 0.53 +1.4
696,154 - SO0679 0.53 -2.9
696,154 - SO0679 0.53 +0.8
696,154 - SO0679 0.53 +0.2
696,154 - SO0679 0.53 +0.8
696,154 - SO0679 0.53 -0.1
696,154 - SO0679 0.53 +0.2
696,154 - SO0679 0.53 -1.2
696,154 - SO0679 0.53 +0.5
696,154 - SO0679 0.53 +0.5
696,154 - SO0679 0.53 -0.2
696,154 - SO0679 0.53 -0.3
696,154 - SO0679 0.53 -2.6
696,154 - SO0679 0.53 -1.0
696,179 - SO0679 0.57 -1.2
696,196 - SO0679 0.59 -0.4
696,216 + SO0679 0.62 +0.4
696,242 + SO0679 0.65 -1.0
696,255 - SO0679 0.67 -1.7
696,260 - SO0679 0.68 +1.6
696,295 + SO0679 0.72 +0.4
696,303 - SO0679 0.73 -1.1
696,394 + SO0679 0.86 -2.9
696,535 - -0.0
696,712 - +0.6
696,753 + +1.0
696,837 - -0.1
696,872 - +2.3
696,897 + +0.4
696,900 - +0.8
696,921 - +0.1
696,928 + +0.9
696,929 - -0.3
696,977 + +0.3
696,978 + +1.3
697,023 + SO0680 0.10 +0.5
697,036 + SO0680 0.11 -0.0
697,108 + SO0680 0.12 -1.2
697,108 + SO0680 0.12 +1.1
697,108 + SO0680 0.12 +0.3
697,108 + SO0680 0.12 -1.4
697,108 + SO0680 0.12 +0.1
697,108 + SO0680 0.12 -0.6
697,108 + SO0680 0.12 +0.1
697,108 + SO0680 0.12 -0.2
697,108 + SO0680 0.12 -1.9
697,108 + SO0680 0.12 -0.4
697,116 - SO0680 0.13 +0.1
697,116 - SO0680 0.13 +0.6
697,116 - SO0680 0.13 +1.3
697,183 + SO0680 0.14 -0.0
697,199 + SO0680 0.15 +0.3
697,236 - SO0680 0.16 -1.2
697,282 + SO0680 0.17 -0.1
697,282 + SO0680 0.17 +1.6
697,283 - SO0680 0.17 +1.9
697,290 - SO0680 0.17 +0.4
697,387 + SO0680 0.20 +1.3
697,395 - SO0680 0.20 -0.2
697,416 - SO0680 0.20 +1.6
697,475 - SO0680 0.22 +1.3

Or see this region's nucleotide sequence