Experiment: SBM - with RNA protect
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0076 and SO0077 are separated by 119 nucleotides SO0077 and SO0078 overlap by 9 nucleotides SO0078 and SO0079 are separated by 44 nucleotides
SO0076: SO0076 - hypothetical protein (NCBI ptt file), at 88,995 to 91,481
SO0076
SO0077: SO0077 - hypothetical 4-hydroxybenzoyl-CoA thioesterase (NCBI ptt file), at 91,601 to 92,017
SO0077
SO0078: SO0078 - hypothetical protein (NCBI ptt file), at 92,009 to 92,812
SO0078
SO0079: SO0079 - conserved hypothetical protein (NCBI ptt file), at 92,857 to 93,123
SO0079
Position (kb) 91
92
93 Strain fitness (log2 ratio) -2
-1
0
1
2 at 90.700 kb on - strand, within SO0076 at 90.701 kb on - strand, within SO0076 at 90.709 kb on + strand, within SO0076 at 90.717 kb on + strand, within SO0076 at 90.717 kb on + strand, within SO0076 at 90.781 kb on - strand, within SO0076 at 90.781 kb on - strand, within SO0076 at 91.007 kb on + strand, within SO0076 at 91.007 kb on + strand, within SO0076 at 91.047 kb on + strand, within SO0076 at 91.047 kb on + strand, within SO0076 at 91.054 kb on + strand, within SO0076 at 91.055 kb on + strand, within SO0076 at 91.055 kb on - strand, within SO0076 at 91.177 kb on + strand, within SO0076 at 91.216 kb on + strand, within SO0076 at 91.275 kb on + strand at 91.345 kb on + strand at 91.355 kb on + strand at 91.355 kb on + strand at 91.355 kb on + strand at 91.355 kb on + strand at 91.446 kb on + strand at 91.503 kb on - strand at 91.529 kb on + strand at 91.621 kb on - strand at 91.663 kb on - strand, within SO0077 at 91.857 kb on + strand, within SO0077 at 91.857 kb on + strand, within SO0077 at 91.865 kb on - strand, within SO0077 at 91.907 kb on + strand, within SO0077 at 91.925 kb on - strand, within SO0077 at 91.979 kb on + strand at 91.996 kb on - strand at 91.998 kb on + strand at 92.006 kb on - strand at 92.006 kb on - strand at 92.065 kb on - strand at 92.094 kb on + strand, within SO0078 at 92.094 kb on + strand, within SO0078 at 92.095 kb on + strand, within SO0078 at 92.096 kb on - strand, within SO0078 at 92.102 kb on - strand, within SO0078 at 92.102 kb on - strand, within SO0078 at 92.119 kb on - strand, within SO0078 at 92.119 kb on - strand, within SO0078 at 92.194 kb on - strand, within SO0078 at 92.205 kb on + strand, within SO0078 at 92.349 kb on - strand, within SO0078 at 92.433 kb on + strand, within SO0078 at 92.442 kb on + strand, within SO0078 at 92.465 kb on - strand, within SO0078 at 92.522 kb on - strand, within SO0078 at 92.667 kb on - strand, within SO0078 at 92.773 kb on - strand at 92.780 kb on - strand at 92.788 kb on - strand at 92.880 kb on + strand at 92.925 kb on + strand, within SO0079 at 92.926 kb on + strand, within SO0079 at 92.926 kb on + strand, within SO0079 at 92.926 kb on + strand, within SO0079 at 92.926 kb on + strand, within SO0079 at 92.926 kb on + strand, within SO0079 at 92.926 kb on + strand, within SO0079 at 92.926 kb on + strand, within SO0079 at 92.934 kb on - strand, within SO0079 at 92.934 kb on - strand, within SO0079 at 92.934 kb on - strand, within SO0079 at 92.934 kb on - strand, within SO0079 at 92.934 kb on - strand, within SO0079 at 92.934 kb on - strand, within SO0079 at 92.934 kb on - strand, within SO0079
Per-strain Table
Position Strand Gene LocusTag Fraction SBM - with RNA protect remove 90,700 - SO0076 0.69 -1.2 90,701 - SO0076 0.69 +1.0 90,709 + SO0076 0.69 -0.3 90,717 + SO0076 0.69 +0.2 90,717 + SO0076 0.69 -0.8 90,781 - SO0076 0.72 -0.3 90,781 - SO0076 0.72 -0.4 91,007 + SO0076 0.81 +0.1 91,007 + SO0076 0.81 -0.7 91,047 + SO0076 0.83 +1.3 91,047 + SO0076 0.83 -1.2 91,054 + SO0076 0.83 -0.5 91,055 + SO0076 0.83 -1.0 91,055 - SO0076 0.83 +1.2 91,177 + SO0076 0.88 +1.8 91,216 + SO0076 0.89 +1.2 91,275 + +0.4 91,345 + +1.4 91,355 + -0.3 91,355 + +1.6 91,355 + +1.7 91,355 + -0.3 91,446 + +1.3 91,503 - +0.9 91,529 + -1.4 91,621 - -1.1 91,663 - SO0077 0.15 -1.7 91,857 + SO0077 0.61 -0.0 91,857 + SO0077 0.61 -0.4 91,865 - SO0077 0.63 -0.4 91,907 + SO0077 0.73 +0.6 91,925 - SO0077 0.78 -1.7 91,979 + +0.1 91,996 - +1.1 91,998 + +0.5 92,006 - +0.9 92,006 - -0.4 92,065 - -1.0 92,094 + SO0078 0.11 -0.8 92,094 + SO0078 0.11 +0.4 92,095 + SO0078 0.11 -0.2 92,096 - SO0078 0.11 -1.1 92,102 - SO0078 0.12 -0.1 92,102 - SO0078 0.12 +1.3 92,119 - SO0078 0.14 -0.2 92,119 - SO0078 0.14 -0.4 92,194 - SO0078 0.23 +0.3 92,205 + SO0078 0.24 +0.2 92,349 - SO0078 0.42 -1.0 92,433 + SO0078 0.53 +1.3 92,442 + SO0078 0.54 -0.4 92,465 - SO0078 0.57 +0.1 92,522 - SO0078 0.64 -0.1 92,667 - SO0078 0.82 -1.8 92,773 - +0.8 92,780 - -1.2 92,788 - -0.6 92,880 + +0.9 92,925 + SO0079 0.25 -0.4 92,926 + SO0079 0.26 -0.0 92,926 + SO0079 0.26 +0.8 92,926 + SO0079 0.26 +0.5 92,926 + SO0079 0.26 +0.5 92,926 + SO0079 0.26 +0.3 92,926 + SO0079 0.26 -0.0 92,926 + SO0079 0.26 -0.6 92,934 - SO0079 0.29 -0.8 92,934 - SO0079 0.29 +0.3 92,934 - SO0079 0.29 -0.9 92,934 - SO0079 0.29 -0.0 92,934 - SO0079 0.29 +0.7 92,934 - SO0079 0.29 +0.9 92,934 - SO0079 0.29 -1.8
Or see this region's nucleotide sequence