Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_R0048

Experiment: BG11 with Chloride 0.9765625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_1378 and tRNA-Leu are separated by 70 nucleotidestRNA-Leu and accC are separated by 155 nucleotides Synpcc7942_1378: Synpcc7942_1378 - hypothetical protein, at 1,419,926 to 1,421,167 _1378 Synpcc7942_R0048: tRNA-Leu - tRNA-Leu, at 1,421,238 to 1,421,319 tRNA-Leu Synpcc7942_1379: accC - acetyl-CoA carboxylase biotin carboxylase subunit, at 1,421,475 to 1,422,836 accC Position (kb) 1421 1422Strain fitness (log2 ratio) -1 0 1 2at 1421.382 kb on - strandat 1421.386 kb on + strandat 1421.477 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11 with Chloride 0.9765625 mM
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1,421,382 - -1.7
1,421,386 + +1.2
1,421,477 - +2.0

Or see this region's nucleotide sequence