Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS17930 and HSERO_RS17935 overlap by 4 nucleotides HSERO_RS17935 and HSERO_RS17940 are separated by 84 nucleotides HSERO_RS17940 and HSERO_RS17945 overlap by 4 nucleotides
HSERO_RS17930: HSERO_RS17930 - acyltransferase, at 4,119,138 to 4,120,214
_RS17930
HSERO_RS17935: HSERO_RS17935 - beta-lactamase, at 4,120,211 to 4,121,029
_RS17935
HSERO_RS17940: HSERO_RS17940 - hypothetical protein, at 4,121,114 to 4,121,509
_RS17940
HSERO_RS17945: HSERO_RS17945 - hypothetical protein, at 4,121,506 to 4,122,366
_RS17945
Position (kb) 4120
4121
4122 Strain fitness (log2 ratio) -1
0
1 at 4119.267 kb on + strand, within HSERO_RS17930 at 4119.274 kb on - strand, within HSERO_RS17930 at 4119.504 kb on + strand, within HSERO_RS17930 at 4119.512 kb on - strand, within HSERO_RS17930 at 4119.640 kb on + strand, within HSERO_RS17930 at 4119.754 kb on + strand, within HSERO_RS17930 at 4119.760 kb on - strand, within HSERO_RS17930 at 4119.909 kb on - strand, within HSERO_RS17930 at 4120.000 kb on + strand, within HSERO_RS17930 at 4120.008 kb on - strand, within HSERO_RS17930 at 4120.178 kb on + strand at 4120.297 kb on + strand, within HSERO_RS17935 at 4120.310 kb on + strand, within HSERO_RS17935 at 4120.323 kb on - strand, within HSERO_RS17935 at 4120.323 kb on - strand, within HSERO_RS17935 at 4120.560 kb on + strand, within HSERO_RS17935 at 4120.565 kb on + strand, within HSERO_RS17935 at 4120.571 kb on - strand, within HSERO_RS17935 at 4120.703 kb on - strand, within HSERO_RS17935 at 4120.727 kb on - strand at 4120.727 kb on - strand, within HSERO_RS17935 at 4120.759 kb on - strand, within HSERO_RS17935 at 4120.775 kb on - strand at 4120.967 kb on - strand at 4121.022 kb on - strand at 4121.142 kb on - strand at 4121.316 kb on - strand, within HSERO_RS17940 at 4121.440 kb on + strand, within HSERO_RS17940 at 4121.704 kb on + strand, within HSERO_RS17945 at 4121.712 kb on - strand, within HSERO_RS17945 at 4121.712 kb on - strand, within HSERO_RS17945 at 4121.712 kb on - strand, within HSERO_RS17945 at 4121.754 kb on + strand, within HSERO_RS17945 at 4121.895 kb on + strand, within HSERO_RS17945 at 4121.969 kb on + strand, within HSERO_RS17945 at 4121.974 kb on + strand, within HSERO_RS17945 at 4121.974 kb on + strand, within HSERO_RS17945 at 4121.982 kb on - strand, within HSERO_RS17945 at 4121.982 kb on - strand, within HSERO_RS17945 at 4122.027 kb on + strand, within HSERO_RS17945
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB remove 4,119,267 + HSERO_RS17930 0.12 +0.2 4,119,274 - HSERO_RS17930 0.13 +0.7 4,119,504 + HSERO_RS17930 0.34 +0.9 4,119,512 - HSERO_RS17930 0.35 +0.4 4,119,640 + HSERO_RS17930 0.47 +1.6 4,119,754 + HSERO_RS17930 0.57 +1.6 4,119,760 - HSERO_RS17930 0.58 -0.1 4,119,909 - HSERO_RS17930 0.72 -0.5 4,120,000 + HSERO_RS17930 0.80 -0.3 4,120,008 - HSERO_RS17930 0.81 +0.2 4,120,178 + -0.5 4,120,297 + HSERO_RS17935 0.11 -0.0 4,120,310 + HSERO_RS17935 0.12 -0.2 4,120,323 - HSERO_RS17935 0.14 +1.2 4,120,323 - HSERO_RS17935 0.14 +0.9 4,120,560 + HSERO_RS17935 0.43 +0.7 4,120,565 + HSERO_RS17935 0.43 -0.6 4,120,571 - HSERO_RS17935 0.44 +0.7 4,120,703 - HSERO_RS17935 0.60 -1.0 4,120,727 - -1.2 4,120,727 - HSERO_RS17935 0.63 +0.2 4,120,759 - HSERO_RS17935 0.67 -1.4 4,120,775 - +0.5 4,120,967 - +0.1 4,121,022 - -0.8 4,121,142 - -0.4 4,121,316 - HSERO_RS17940 0.51 +1.0 4,121,440 + HSERO_RS17940 0.82 -0.6 4,121,704 + HSERO_RS17945 0.23 -0.4 4,121,712 - HSERO_RS17945 0.24 +0.1 4,121,712 - HSERO_RS17945 0.24 -1.1 4,121,712 - HSERO_RS17945 0.24 +0.4 4,121,754 + HSERO_RS17945 0.29 -0.9 4,121,895 + HSERO_RS17945 0.45 -0.5 4,121,969 + HSERO_RS17945 0.54 +0.6 4,121,974 + HSERO_RS17945 0.54 -0.8 4,121,974 + HSERO_RS17945 0.54 -1.2 4,121,982 - HSERO_RS17945 0.55 -0.7 4,121,982 - HSERO_RS17945 0.55 -0.6 4,122,027 + HSERO_RS17945 0.61 +0.4
Or see this region's nucleotide sequence