Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04660 and PGA1_c04670 are separated by 235 nucleotides PGA1_c04670 and PGA1_c04680 are separated by 5 nucleotides PGA1_c04680 and PGA1_c04690 are separated by 125 nucleotides PGA1_c04690 and PGA1_c04700 are separated by 39 nucleotides
PGA1_c04660: PGA1_c04660 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase FabA, at 459,031 to 459,540
_c04660
PGA1_c04670: PGA1_c04670 - putative metal ion uptake regulator, at 459,776 to 460,192
_c04670
PGA1_c04680: PGA1_c04680 - transcriptional regulator, LysR family, at 460,198 to 461,106
_c04680
PGA1_c04690: PGA1_c04690 - putative phytanoyl-CoA dioxygenase, at 461,232 to 462,029
_c04690
PGA1_c04700: PGA1_c04700 - hypothetical protein, at 462,069 to 463,013
_c04700
Position (kb) 460
461
462 Strain fitness (log2 ratio) -2
-1
0
1
2 at 459.615 kb on + strand at 459.615 kb on - strand at 459.623 kb on - strand at 459.624 kb on - strand at 459.648 kb on + strand at 459.654 kb on + strand at 459.671 kb on + strand at 459.687 kb on - strand at 459.728 kb on - strand at 459.736 kb on - strand at 459.760 kb on + strand at 459.760 kb on + strand at 459.763 kb on - strand at 459.768 kb on - strand at 459.768 kb on - strand at 459.768 kb on - strand at 459.768 kb on - strand at 459.781 kb on + strand at 459.786 kb on + strand at 459.839 kb on + strand, within PGA1_c04670 at 459.846 kb on + strand, within PGA1_c04670 at 459.847 kb on - strand, within PGA1_c04670 at 459.925 kb on + strand, within PGA1_c04670 at 459.925 kb on + strand, within PGA1_c04670 at 459.925 kb on + strand, within PGA1_c04670 at 459.933 kb on - strand, within PGA1_c04670 at 459.934 kb on - strand, within PGA1_c04670 at 459.984 kb on + strand, within PGA1_c04670 at 460.041 kb on + strand, within PGA1_c04670 at 460.060 kb on + strand, within PGA1_c04670 at 460.068 kb on - strand, within PGA1_c04670 at 460.081 kb on - strand, within PGA1_c04670 at 460.081 kb on - strand, within PGA1_c04670 at 460.180 kb on + strand at 460.186 kb on + strand at 460.254 kb on + strand at 460.254 kb on + strand at 460.264 kb on + strand at 460.272 kb on - strand at 460.274 kb on + strand at 460.274 kb on + strand at 460.282 kb on - strand at 460.282 kb on - strand at 460.282 kb on - strand at 460.293 kb on + strand, within PGA1_c04680 at 460.293 kb on + strand, within PGA1_c04680 at 460.293 kb on + strand, within PGA1_c04680 at 460.313 kb on + strand, within PGA1_c04680 at 460.316 kb on - strand, within PGA1_c04680 at 460.336 kb on + strand, within PGA1_c04680 at 460.350 kb on - strand, within PGA1_c04680 at 460.386 kb on - strand, within PGA1_c04680 at 460.391 kb on - strand, within PGA1_c04680 at 460.392 kb on - strand, within PGA1_c04680 at 460.428 kb on + strand, within PGA1_c04680 at 460.428 kb on - strand, within PGA1_c04680 at 460.454 kb on + strand, within PGA1_c04680 at 460.474 kb on - strand, within PGA1_c04680 at 460.474 kb on - strand, within PGA1_c04680 at 460.475 kb on + strand, within PGA1_c04680 at 460.475 kb on + strand, within PGA1_c04680 at 460.483 kb on - strand, within PGA1_c04680 at 460.493 kb on - strand, within PGA1_c04680 at 460.564 kb on + strand, within PGA1_c04680 at 460.572 kb on - strand, within PGA1_c04680 at 460.596 kb on + strand, within PGA1_c04680 at 460.599 kb on + strand, within PGA1_c04680 at 460.656 kb on + strand, within PGA1_c04680 at 460.664 kb on - strand, within PGA1_c04680 at 460.745 kb on + strand, within PGA1_c04680 at 460.752 kb on + strand, within PGA1_c04680 at 460.765 kb on + strand, within PGA1_c04680 at 460.773 kb on - strand, within PGA1_c04680 at 460.825 kb on + strand, within PGA1_c04680 at 460.857 kb on - strand, within PGA1_c04680 at 460.874 kb on - strand, within PGA1_c04680 at 460.899 kb on + strand, within PGA1_c04680 at 460.907 kb on - strand, within PGA1_c04680 at 460.922 kb on - strand, within PGA1_c04680 at 460.971 kb on + strand, within PGA1_c04680 at 460.974 kb on - strand, within PGA1_c04680 at 460.976 kb on + strand, within PGA1_c04680 at 460.984 kb on - strand, within PGA1_c04680 at 460.984 kb on - strand, within PGA1_c04680 at 460.994 kb on + strand, within PGA1_c04680 at 460.999 kb on + strand, within PGA1_c04680 at 461.002 kb on - strand, within PGA1_c04680 at 461.002 kb on - strand, within PGA1_c04680 at 461.004 kb on + strand, within PGA1_c04680 at 461.004 kb on + strand, within PGA1_c04680 at 461.039 kb on + strand at 461.039 kb on + strand at 461.047 kb on - strand at 461.048 kb on + strand at 461.048 kb on + strand at 461.056 kb on - strand at 461.056 kb on - strand at 461.058 kb on - strand at 461.066 kb on - strand at 461.071 kb on + strand at 461.091 kb on + strand at 461.151 kb on + strand at 461.152 kb on - strand at 461.164 kb on - strand at 461.236 kb on - strand at 461.289 kb on + strand at 461.289 kb on + strand at 461.289 kb on + strand at 461.297 kb on - strand at 461.348 kb on - strand, within PGA1_c04690 at 461.366 kb on + strand, within PGA1_c04690 at 461.435 kb on - strand, within PGA1_c04690 at 461.437 kb on + strand, within PGA1_c04690 at 461.443 kb on - strand, within PGA1_c04690 at 461.466 kb on + strand, within PGA1_c04690 at 461.478 kb on + strand, within PGA1_c04690 at 461.493 kb on + strand, within PGA1_c04690 at 461.501 kb on - strand, within PGA1_c04690 at 461.543 kb on - strand, within PGA1_c04690 at 461.557 kb on + strand, within PGA1_c04690 at 461.557 kb on + strand, within PGA1_c04690 at 461.615 kb on + strand, within PGA1_c04690 at 461.643 kb on - strand, within PGA1_c04690 at 461.676 kb on - strand, within PGA1_c04690 at 461.687 kb on - strand, within PGA1_c04690 at 461.710 kb on + strand, within PGA1_c04690 at 461.718 kb on - strand, within PGA1_c04690 at 461.722 kb on + strand, within PGA1_c04690 at 461.748 kb on + strand, within PGA1_c04690 at 461.748 kb on + strand, within PGA1_c04690 at 461.748 kb on + strand, within PGA1_c04690 at 461.753 kb on + strand, within PGA1_c04690 at 461.756 kb on - strand, within PGA1_c04690 at 461.756 kb on - strand, within PGA1_c04690 at 461.756 kb on - strand, within PGA1_c04690 at 461.847 kb on - strand, within PGA1_c04690 at 461.900 kb on + strand, within PGA1_c04690 at 461.911 kb on + strand, within PGA1_c04690 at 461.926 kb on + strand, within PGA1_c04690 at 461.926 kb on + strand, within PGA1_c04690 at 461.934 kb on - strand, within PGA1_c04690 at 461.944 kb on - strand, within PGA1_c04690 at 461.944 kb on - strand, within PGA1_c04690 at 461.983 kb on - strand at 461.985 kb on - strand at 462.032 kb on + strand at 462.059 kb on + strand at 462.067 kb on - strand at 462.085 kb on + strand at 462.085 kb on + strand at 462.093 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 459,615 + -0.2 459,615 - +1.0 459,623 - -0.5 459,624 - +0.9 459,648 + -0.6 459,654 + -0.4 459,671 + -0.6 459,687 - +0.4 459,728 - -0.1 459,736 - -0.2 459,760 + -0.8 459,760 + -1.2 459,763 - +0.2 459,768 - +0.1 459,768 - +1.3 459,768 - -0.5 459,768 - +0.5 459,781 + +0.0 459,786 + -0.6 459,839 + PGA1_c04670 0.15 -1.2 459,846 + PGA1_c04670 0.17 +1.0 459,847 - PGA1_c04670 0.17 -1.7 459,925 + PGA1_c04670 0.36 +0.8 459,925 + PGA1_c04670 0.36 -0.8 459,925 + PGA1_c04670 0.36 +0.3 459,933 - PGA1_c04670 0.38 +0.4 459,934 - PGA1_c04670 0.38 -0.3 459,984 + PGA1_c04670 0.50 -1.3 460,041 + PGA1_c04670 0.64 -0.8 460,060 + PGA1_c04670 0.68 +0.5 460,068 - PGA1_c04670 0.70 +1.7 460,081 - PGA1_c04670 0.73 -0.5 460,081 - PGA1_c04670 0.73 -0.6 460,180 + -0.2 460,186 + +0.8 460,254 + +2.0 460,254 + -0.3 460,264 + +0.1 460,272 - +0.2 460,274 + +0.0 460,274 + +1.0 460,282 - -0.7 460,282 - +0.3 460,282 - +1.1 460,293 + PGA1_c04680 0.10 -0.5 460,293 + PGA1_c04680 0.10 -0.3 460,293 + PGA1_c04680 0.10 +1.1 460,313 + PGA1_c04680 0.13 -0.1 460,316 - PGA1_c04680 0.13 -2.2 460,336 + PGA1_c04680 0.15 +0.3 460,350 - PGA1_c04680 0.17 -1.0 460,386 - PGA1_c04680 0.21 -0.5 460,391 - PGA1_c04680 0.21 -0.0 460,392 - PGA1_c04680 0.21 -0.6 460,428 + PGA1_c04680 0.25 -0.3 460,428 - PGA1_c04680 0.25 -0.0 460,454 + PGA1_c04680 0.28 +0.5 460,474 - PGA1_c04680 0.30 -0.3 460,474 - PGA1_c04680 0.30 -0.3 460,475 + PGA1_c04680 0.30 -0.7 460,475 + PGA1_c04680 0.30 +0.0 460,483 - PGA1_c04680 0.31 -0.3 460,493 - PGA1_c04680 0.32 -0.3 460,564 + PGA1_c04680 0.40 -1.0 460,572 - PGA1_c04680 0.41 -0.7 460,596 + PGA1_c04680 0.44 +0.1 460,599 + PGA1_c04680 0.44 -0.2 460,656 + PGA1_c04680 0.50 -1.4 460,664 - PGA1_c04680 0.51 -0.2 460,745 + PGA1_c04680 0.60 -0.2 460,752 + PGA1_c04680 0.61 +0.5 460,765 + PGA1_c04680 0.62 -0.8 460,773 - PGA1_c04680 0.63 -0.7 460,825 + PGA1_c04680 0.69 -1.8 460,857 - PGA1_c04680 0.72 -0.0 460,874 - PGA1_c04680 0.74 -0.4 460,899 + PGA1_c04680 0.77 +0.4 460,907 - PGA1_c04680 0.78 -0.3 460,922 - PGA1_c04680 0.80 -0.5 460,971 + PGA1_c04680 0.85 -0.7 460,974 - PGA1_c04680 0.85 +0.7 460,976 + PGA1_c04680 0.86 -0.4 460,984 - PGA1_c04680 0.86 -0.6 460,984 - PGA1_c04680 0.86 -0.4 460,994 + PGA1_c04680 0.88 -0.7 460,999 + PGA1_c04680 0.88 +0.4 461,002 - PGA1_c04680 0.88 -1.2 461,002 - PGA1_c04680 0.88 -0.6 461,004 + PGA1_c04680 0.89 -0.5 461,004 + PGA1_c04680 0.89 +0.5 461,039 + +1.1 461,039 + -0.3 461,047 - +0.9 461,048 + +1.3 461,048 + -0.6 461,056 - +0.4 461,056 - -0.2 461,058 - +0.0 461,066 - +0.1 461,071 + +0.4 461,091 + -0.1 461,151 + -1.3 461,152 - -1.4 461,164 - -0.1 461,236 - -0.4 461,289 + -1.0 461,289 + -0.9 461,289 + +0.1 461,297 - +0.3 461,348 - PGA1_c04690 0.15 +0.6 461,366 + PGA1_c04690 0.17 +1.0 461,435 - PGA1_c04690 0.25 -0.3 461,437 + PGA1_c04690 0.26 -2.4 461,443 - PGA1_c04690 0.26 -1.7 461,466 + PGA1_c04690 0.29 +0.1 461,478 + PGA1_c04690 0.31 +0.2 461,493 + PGA1_c04690 0.33 +1.0 461,501 - PGA1_c04690 0.34 +0.0 461,543 - PGA1_c04690 0.39 -0.5 461,557 + PGA1_c04690 0.41 +1.6 461,557 + PGA1_c04690 0.41 -0.0 461,615 + PGA1_c04690 0.48 -0.9 461,643 - PGA1_c04690 0.52 +1.4 461,676 - PGA1_c04690 0.56 -0.8 461,687 - PGA1_c04690 0.57 +0.6 461,710 + PGA1_c04690 0.60 -0.4 461,718 - PGA1_c04690 0.61 -0.2 461,722 + PGA1_c04690 0.61 -0.3 461,748 + PGA1_c04690 0.65 -0.6 461,748 + PGA1_c04690 0.65 +0.6 461,748 + PGA1_c04690 0.65 +0.3 461,753 + PGA1_c04690 0.65 -0.1 461,756 - PGA1_c04690 0.66 -0.2 461,756 - PGA1_c04690 0.66 +0.4 461,756 - PGA1_c04690 0.66 +1.7 461,847 - PGA1_c04690 0.77 +1.9 461,900 + PGA1_c04690 0.84 -2.1 461,911 + PGA1_c04690 0.85 -0.3 461,926 + PGA1_c04690 0.87 -1.5 461,926 + PGA1_c04690 0.87 +0.4 461,934 - PGA1_c04690 0.88 +0.3 461,944 - PGA1_c04690 0.89 +0.2 461,944 - PGA1_c04690 0.89 -0.8 461,983 - -0.0 461,985 - -0.6 462,032 + +0.0 462,059 + +0.5 462,067 - +0.3 462,085 + +0.1 462,085 + -0.9 462,093 - -0.1
Or see this region's nucleotide sequence