Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00380 and PGA1_262p00390 are separated by 353 nucleotides PGA1_262p00390 and PGA1_262p00400 overlap by 8 nucleotides
PGA1_262p00380: PGA1_262p00380 - sugar transferase, at 45,428 to 46,111
_262p00380
PGA1_262p00390: PGA1_262p00390 - aldose 1-epimerase, at 46,465 to 47,523
_262p00390
PGA1_262p00400: PGA1_262p00400 - putative cytochrome c peroxidase, at 47,516 to 48,868
_262p00400
Position (kb) 46
47
48 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 45.535 kb on + strand, within PGA1_262p00380 at 45.543 kb on - strand, within PGA1_262p00380 at 45.565 kb on - strand, within PGA1_262p00380 at 45.608 kb on - strand, within PGA1_262p00380 at 45.769 kb on + strand, within PGA1_262p00380 at 45.788 kb on + strand, within PGA1_262p00380 at 45.796 kb on - strand, within PGA1_262p00380 at 45.881 kb on + strand, within PGA1_262p00380 at 45.890 kb on - strand, within PGA1_262p00380 at 46.146 kb on - strand at 46.149 kb on + strand at 46.254 kb on - strand at 46.290 kb on - strand at 46.290 kb on - strand at 46.308 kb on - strand at 46.318 kb on + strand at 46.431 kb on - strand at 46.432 kb on - strand at 46.460 kb on - strand at 46.518 kb on + strand at 46.666 kb on - strand, within PGA1_262p00390 at 46.763 kb on + strand, within PGA1_262p00390 at 46.808 kb on - strand, within PGA1_262p00390 at 46.869 kb on + strand, within PGA1_262p00390 at 46.872 kb on + strand, within PGA1_262p00390 at 46.966 kb on - strand, within PGA1_262p00390 at 46.971 kb on + strand, within PGA1_262p00390 at 46.971 kb on + strand, within PGA1_262p00390 at 46.971 kb on + strand, within PGA1_262p00390 at 46.976 kb on + strand, within PGA1_262p00390 at 47.066 kb on + strand, within PGA1_262p00390 at 47.329 kb on + strand, within PGA1_262p00390 at 47.329 kb on + strand, within PGA1_262p00390 at 47.329 kb on + strand, within PGA1_262p00390 at 47.337 kb on - strand, within PGA1_262p00390 at 47.406 kb on + strand, within PGA1_262p00390 at 47.555 kb on + strand at 47.573 kb on - strand at 47.573 kb on - strand at 47.596 kb on - strand at 47.681 kb on - strand, within PGA1_262p00400 at 47.739 kb on + strand, within PGA1_262p00400 at 47.762 kb on + strand, within PGA1_262p00400 at 47.771 kb on + strand, within PGA1_262p00400 at 47.881 kb on - strand, within PGA1_262p00400 at 48.265 kb on - strand, within PGA1_262p00400 at 48.426 kb on - strand, within PGA1_262p00400
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 45,535 + PGA1_262p00380 0.16 +0.3 45,543 - PGA1_262p00380 0.17 -1.3 45,565 - PGA1_262p00380 0.20 +0.8 45,608 - PGA1_262p00380 0.26 +1.0 45,769 + PGA1_262p00380 0.50 -2.8 45,788 + PGA1_262p00380 0.53 +0.2 45,796 - PGA1_262p00380 0.54 +0.1 45,881 + PGA1_262p00380 0.66 +1.4 45,890 - PGA1_262p00380 0.68 +0.1 46,146 - -0.5 46,149 + -0.2 46,254 - -0.3 46,290 - -0.5 46,290 - +1.9 46,308 - +0.1 46,318 + +0.1 46,431 - +0.9 46,432 - +0.6 46,460 - -0.0 46,518 + -0.5 46,666 - PGA1_262p00390 0.19 +1.0 46,763 + PGA1_262p00390 0.28 +0.1 46,808 - PGA1_262p00390 0.32 +0.5 46,869 + PGA1_262p00390 0.38 +0.1 46,872 + PGA1_262p00390 0.38 +0.6 46,966 - PGA1_262p00390 0.47 +0.1 46,971 + PGA1_262p00390 0.48 +0.5 46,971 + PGA1_262p00390 0.48 +0.7 46,971 + PGA1_262p00390 0.48 -0.4 46,976 + PGA1_262p00390 0.48 +0.2 47,066 + PGA1_262p00390 0.57 +0.2 47,329 + PGA1_262p00390 0.82 -0.0 47,329 + PGA1_262p00390 0.82 +0.4 47,329 + PGA1_262p00390 0.82 -0.3 47,337 - PGA1_262p00390 0.82 +0.7 47,406 + PGA1_262p00390 0.89 +0.9 47,555 + +0.2 47,573 - -0.2 47,573 - -0.6 47,596 - -0.2 47,681 - PGA1_262p00400 0.12 -1.0 47,739 + PGA1_262p00400 0.16 -0.3 47,762 + PGA1_262p00400 0.18 -2.9 47,771 + PGA1_262p00400 0.19 -0.1 47,881 - PGA1_262p00400 0.27 +0.1 48,265 - PGA1_262p00400 0.55 -0.4 48,426 - PGA1_262p00400 0.67 -1.2
Or see this region's nucleotide sequence