Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c30150

Experiment: Ammonium chloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N)
3,150,797	-				+0.3
3,150,831	+		PGA1_c30140	0.10	+1.1
3,150,877	+		PGA1_c30140	0.16	+0.5
3,150,884	+		PGA1_c30140	0.17	+0.1
3,150,907	-		PGA1_c30140	0.21	+0.5
3,150,907	-		PGA1_c30140	0.21	-0.7
3,150,932	+		PGA1_c30140	0.24	+1.0
3,150,985	-		PGA1_c30140	0.31	+0.2
3,151,054	-		PGA1_c30140	0.40	+0.3
3,151,072	-		PGA1_c30140	0.43	+0.7
3,151,084	+		PGA1_c30140	0.44	-0.4
3,151,125	+		PGA1_c30140	0.50	-0.9
3,151,125	+		PGA1_c30140	0.50	-0.2
3,151,177	+		PGA1_c30140	0.57	+0.1
3,151,185	-		PGA1_c30140	0.58	+0.5
3,151,185	-		PGA1_c30140	0.58	-0.4
3,151,185	-		PGA1_c30140	0.58	-0.5
3,151,185	-		PGA1_c30140	0.58	+0.8
3,151,203	-		PGA1_c30140	0.60	-0.3
3,151,214	-		PGA1_c30140	0.62	-0.5
3,151,214	-		PGA1_c30140	0.62	+0.5
3,151,276	+		PGA1_c30140	0.70	+0.4
3,151,288	+		PGA1_c30140	0.72	-0.8
3,151,296	-		PGA1_c30140	0.73	-0.1
3,151,296	-		PGA1_c30140	0.73	-0.2
3,151,349	+		PGA1_c30140	0.80	+0.7
3,151,349	+		PGA1_c30140	0.80	+0.1
3,151,349	+		PGA1_c30140	0.80	+0.5
3,151,349	+		PGA1_c30140	0.80	+0.1
3,151,357	-		PGA1_c30140	0.81	+0.6
3,151,357	-		PGA1_c30140	0.81	-0.2
3,151,357	-		PGA1_c30140	0.81	-2.5
3,151,357	-		PGA1_c30140	0.81	+0.5
3,151,366	+		PGA1_c30140	0.82	+0.5
3,151,382	-		PGA1_c30140	0.85	+1.3
3,151,402	-		PGA1_c30140	0.87	-0.0
3,151,447	+				-1.3
3,151,472	-				+1.0
3,151,474	+				+1.0
3,151,493	+				-0.5
3,151,498	-				-1.5
3,151,501	-				-0.2
3,151,505	+				+0.3
3,151,513	-				-1.0
3,151,515	+				+0.0
3,151,515	+				-0.7
3,151,522	+				-0.2
3,151,522	+				+0.1
3,151,523	-				+0.2
3,151,523	-				-0.3
3,151,524	-				+0.0
3,151,530	-				+0.7
3,151,530	-				+0.0
3,151,530	-				-0.7
3,151,530	-				+0.6
3,151,599	-				+0.5
3,151,608	+				+0.9
3,151,614	-				+0.3
3,151,616	-				+0.7
3,151,616	-				+0.2
3,151,642	+				+0.0
3,151,672	-				+0.8
3,151,682	+				+0.1
3,151,685	-				+0.4
3,151,690	-				-0.4
3,151,719	+				+0.1
3,151,800	+				+0.6
3,151,808	+				+1.3
3,151,838	+				+0.5
3,151,883	+				-1.2
3,151,915	-				-1.5
3,151,920	-				-0.1
3,151,940	+				-0.9
3,151,947	+		PGA1_c30150	0.10	-2.0
3,151,953	-		PGA1_c30150	0.11	-0.8
3,151,974	+		PGA1_c30150	0.12	-1.9
3,152,007	-		PGA1_c30150	0.14	-1.5
3,152,034	+		PGA1_c30150	0.16	-2.5
3,152,047	-		PGA1_c30150	0.16	-3.6
3,152,092	+		PGA1_c30150	0.19	-1.6
3,152,154	-		PGA1_c30150	0.23	-1.4
3,152,181	+		PGA1_c30150	0.25	-3.7
3,152,208	+		PGA1_c30150	0.26	-0.6
3,152,220	+		PGA1_c30150	0.27	-1.3
3,152,225	+		PGA1_c30150	0.27	-1.0
3,152,232	+		PGA1_c30150	0.28	-1.9
3,152,240	-		PGA1_c30150	0.28	-2.8
3,152,252	+		PGA1_c30150	0.29	-3.3
3,152,252	+		PGA1_c30150	0.29	-2.4
3,152,260	-		PGA1_c30150	0.30	-2.5
3,152,260	-		PGA1_c30150	0.30	-1.1
3,152,260	-		PGA1_c30150	0.30	-2.1
3,152,277	+		PGA1_c30150	0.31	-2.4
3,152,277	+		PGA1_c30150	0.31	+0.1
3,152,298	+		PGA1_c30150	0.32	-3.8
3,152,306	-		PGA1_c30150	0.33	-1.5
3,152,430	+		PGA1_c30150	0.40	-2.8
3,152,438	-		PGA1_c30150	0.41	-0.6
3,152,457	+		PGA1_c30150	0.42	+0.3
3,152,539	+		PGA1_c30150	0.47	-0.8
3,152,544	+		PGA1_c30150	0.47	-0.0
3,152,547	-		PGA1_c30150	0.47	-1.3
3,152,580	-		PGA1_c30150	0.50	-1.3
3,152,580	-		PGA1_c30150	0.50	-0.7
3,152,599	-		PGA1_c30150	0.51	-1.5
3,152,671	+		PGA1_c30150	0.55	-0.6
3,152,681	+		PGA1_c30150	0.56	-1.9
3,152,689	-		PGA1_c30150	0.56	-2.0
3,152,689	-		PGA1_c30150	0.56	-0.5
3,152,718	+		PGA1_c30150	0.58	-2.8
3,152,723	+		PGA1_c30150	0.58	-1.9
3,152,731	-		PGA1_c30150	0.59	-1.4
3,152,739	+		PGA1_c30150	0.59	-1.5
3,152,753	-		PGA1_c30150	0.60	-1.2
3,152,753	-		PGA1_c30150	0.60	-3.5
3,152,753	-		PGA1_c30150	0.60	-1.4
3,152,826	-		PGA1_c30150	0.65	-0.8
3,152,856	+		PGA1_c30150	0.67	-2.7
3,152,870	-		PGA1_c30150	0.68	-1.7
3,152,896	+		PGA1_c30150	0.69	-1.5
3,152,903	-		PGA1_c30150	0.70	-2.1
3,153,013	+		PGA1_c30150	0.76	-1.5
3,153,053	+		PGA1_c30150	0.79	-1.6
3,153,053	+		PGA1_c30150	0.79	+0.3
3,153,053	+		PGA1_c30150	0.79	-1.8
3,153,061	-		PGA1_c30150	0.79	-1.6
3,153,061	-		PGA1_c30150	0.79	-0.1
3,153,140	+		PGA1_c30150	0.84	-1.6
3,153,145	+		PGA1_c30150	0.85	-1.2
3,153,149	+		PGA1_c30150	0.85	-0.7
3,153,237	+				-2.5
3,153,248	+				-1.5
3,153,304	+				-1.5
3,153,335	+				-0.9
3,153,343	-				+0.2
3,153,394	+				+1.7
3,153,395	-				-1.2
3,153,395	-				-1.9
3,153,399	+				-1.5
3,153,410	-				+0.3
3,153,461	-				-0.0
3,153,469	+				-0.4
3,153,469	+				-1.5
3,153,469	+				+0.5
3,153,472	-				-0.7
3,153,472	-				-0.3
3,153,477	-				-0.3
3,153,477	-				+0.7
3,153,477	-				+0.9
3,153,522	+				-0.7
3,153,529	+				+0.1
3,153,579	+				-1.2
3,153,579	+				-3.8
3,153,687	+		PGA1_c30160	0.19	-1.1
3,153,740	+		PGA1_c30160	0.23	-2.2
3,153,784	+		PGA1_c30160	0.27	-2.4
3,153,835	-		PGA1_c30160	0.32	+0.0
3,153,843	+		PGA1_c30160	0.33	-1.5
3,153,848	+		PGA1_c30160	0.33	-2.7
3,153,851	-		PGA1_c30160	0.33	-3.6
3,153,853	+		PGA1_c30160	0.34	-2.7
3,153,853	+		PGA1_c30160	0.34	-3.0
3,153,853	+		PGA1_c30160	0.34	-0.7
3,153,853	+		PGA1_c30160	0.34	-1.1
3,153,853	+		PGA1_c30160	0.34	-1.5
3,153,853	+		PGA1_c30160	0.34	-2.6
3,153,853	+		PGA1_c30160	0.34	-1.1
3,153,853	+		PGA1_c30160	0.34	-0.9
3,153,853	+		PGA1_c30160	0.34	-2.2
3,153,853	+		PGA1_c30160	0.34	-1.5
3,153,853	+		PGA1_c30160	0.34	-1.7
3,153,861	-		PGA1_c30160	0.34	-1.4
3,153,861	-		PGA1_c30160	0.34	-1.8
3,153,861	-		PGA1_c30160	0.34	-1.3
3,153,861	-		PGA1_c30160	0.34	-0.9
3,153,861	-		PGA1_c30160	0.34	-2.3
3,153,861	-		PGA1_c30160	0.34	-2.9
3,153,861	-		PGA1_c30160	0.34	-2.5
3,153,861	-		PGA1_c30160	0.34	-2.8
3,153,861	-		PGA1_c30160	0.34	+0.1
3,153,861	-		PGA1_c30160	0.34	-0.6
3,153,861	-		PGA1_c30160	0.34	-2.5
3,153,861	-		PGA1_c30160	0.34	-0.6
3,153,861	-		PGA1_c30160	0.34	-1.3
3,153,871	-		PGA1_c30160	0.35	-0.9
3,153,938	+		PGA1_c30160	0.41	-0.9
3,153,938	+		PGA1_c30160	0.41	-1.2
3,153,946	-		PGA1_c30160	0.42	-1.5
3,153,951	-		PGA1_c30160	0.42	-1.8
3,153,956	-		PGA1_c30160	0.43	-1.0
3,154,012	+		PGA1_c30160	0.48	-0.6
3,154,012	+		PGA1_c30160	0.48	-1.7
3,154,012	+		PGA1_c30160	0.48	-0.1
3,154,012	+		PGA1_c30160	0.48	-1.5
3,154,012	+		PGA1_c30160	0.48	-1.5
3,154,012	+		PGA1_c30160	0.48	-4.3
3,154,012	+		PGA1_c30160	0.48	-1.6
3,154,012	+		PGA1_c30160	0.48	-2.4
3,154,012	+		PGA1_c30160	0.48	-1.6
3,154,012	+		PGA1_c30160	0.48	-0.9
3,154,012	+		PGA1_c30160	0.48	-2.2
3,154,020	-		PGA1_c30160	0.49	+0.6
3,154,020	-		PGA1_c30160	0.49	-1.0
3,154,020	-		PGA1_c30160	0.49	-1.7
3,154,020	-		PGA1_c30160	0.49	-1.5
3,154,020	-		PGA1_c30160	0.49	-3.6
3,154,020	-		PGA1_c30160	0.49	-1.8
3,154,020	-		PGA1_c30160	0.49	-1.0
3,154,020	-		PGA1_c30160	0.49	-1.3
3,154,020	-		PGA1_c30160	0.49	-1.5
3,154,020	-		PGA1_c30160	0.49	-1.3
3,154,020	-		PGA1_c30160	0.49	-2.5
3,154,020	-		PGA1_c30160	0.49	-0.6
3,154,042	-		PGA1_c30160	0.51	-0.9
3,154,053	-		PGA1_c30160	0.52	-1.7
3,154,062	+		PGA1_c30160	0.52	-2.3
3,154,062	+		PGA1_c30160	0.52	-2.2
3,154,062	+		PGA1_c30160	0.52	-3.1
3,154,070	-		PGA1_c30160	0.53	-3.5
3,154,106	+		PGA1_c30160	0.56	-0.2
3,154,108	+		PGA1_c30160	0.57	-0.6
3,154,108	+		PGA1_c30160	0.57	-2.4
3,154,116	-		PGA1_c30160	0.57	-2.1
3,154,116	-		PGA1_c30160	0.57	-1.7
3,154,116	-		PGA1_c30160	0.57	+0.5
3,154,134	-		PGA1_c30160	0.59	-0.6
3,154,139	-		PGA1_c30160	0.59	-1.2
3,154,155	-		PGA1_c30160	0.61	-1.5
3,154,190	+		PGA1_c30160	0.64	-1.4
3,154,234	+		PGA1_c30160	0.68	-3.0
3,154,242	-		PGA1_c30160	0.69	-2.0
3,154,246	+		PGA1_c30160	0.69	-1.9
3,154,299	+		PGA1_c30160	0.74	-2.4
3,154,299	+		PGA1_c30160	0.74	-2.5
3,154,307	-		PGA1_c30160	0.75	-1.6
3,154,307	-		PGA1_c30160	0.75	-1.4
3,154,307	-		PGA1_c30160	0.75	+0.5
3,154,307	-		PGA1_c30160	0.75	-0.9
3,154,307	-		PGA1_c30160	0.75	+0.1
3,154,307	-		PGA1_c30160	0.75	-2.0
3,154,307	-		PGA1_c30160	0.75	-2.3
3,154,309	+		PGA1_c30160	0.75	-3.2
3,154,309	+		PGA1_c30160	0.75	-0.0
3,154,309	+		PGA1_c30160	0.75	-2.6
3,154,309	+		PGA1_c30160	0.75	-2.5
3,154,309	+		PGA1_c30160	0.75	-1.0
3,154,309	+		PGA1_c30160	0.75	-2.5
3,154,309	+		PGA1_c30160	0.75	-1.1
3,154,311	+		PGA1_c30160	0.75	-0.7
3,154,311	+		PGA1_c30160	0.75	-0.9
3,154,317	-		PGA1_c30160	0.76	-1.6
3,154,317	-		PGA1_c30160	0.76	-2.8
3,154,317	-		PGA1_c30160	0.76	-1.3
3,154,317	-		PGA1_c30160	0.76	-1.2
3,154,317	-		PGA1_c30160	0.76	-4.0
3,154,317	-		PGA1_c30160	0.76	-0.5
3,154,317	-		PGA1_c30160	0.76	-3.4
3,154,317	-		PGA1_c30160	0.76	-2.4
3,154,319	-		PGA1_c30160	0.76	-2.5
3,154,319	-		PGA1_c30160	0.76	+0.4
3,154,319	-		PGA1_c30160	0.76	-1.0
3,154,319	-		PGA1_c30160	0.76	-2.0
3,154,319	-		PGA1_c30160	0.76	+0.9
3,154,345	-		PGA1_c30160	0.78	-2.2
3,154,345	-		PGA1_c30160	0.78	-0.9
3,154,355	+		PGA1_c30160	0.79	+1.1
3,154,363	-		PGA1_c30160	0.80	-1.7