Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c18830 and PGA1_c18850 are separated by 240 nucleotides PGA1_c18850 and PGA1_c18860 are separated by 88 nucleotides PGA1_c18860 and PGA1_c18865 overlap by 8 nucleotides PGA1_c18865 and PGA1_c18870 overlap by 4 nucleotides
PGA1_c18830: PGA1_c18830 - aconitate hydratase AcnA, at 1,955,173 to 1,957,860
_c18830
PGA1_c18850: PGA1_c18850 - Antibiotic biosynthesis monooxygenase., at 1,958,101 to 1,958,412
_c18850
PGA1_c18860: PGA1_c18860 - thiol:disulfide interchange protein CcmG, at 1,958,501 to 1,959,040
_c18860
PGA1_c18865: PGA1_c18865 - heme exporter protein D, at 1,959,033 to 1,959,206
_c18865
PGA1_c18870: PGA1_c18870 - heme exporter protein C, at 1,959,203 to 1,959,934
_c18870
Position (kb)
1958
1959 Strain fitness (log2 ratio)
-2
-1
0
1 at 1957.830 kb on - strand at 1957.830 kb on - strand at 1957.835 kb on - strand at 1957.885 kb on - strand at 1957.891 kb on + strand at 1957.891 kb on + strand at 1957.891 kb on + strand at 1957.891 kb on + strand at 1957.899 kb on - strand at 1957.900 kb on - strand at 1958.018 kb on - strand at 1958.083 kb on + strand at 1958.083 kb on + strand at 1958.091 kb on + strand at 1958.091 kb on + strand at 1958.099 kb on - strand at 1958.099 kb on - strand at 1958.099 kb on - strand at 1958.137 kb on + strand, within PGA1_c18850 at 1958.151 kb on - strand, within PGA1_c18850 at 1958.242 kb on + strand, within PGA1_c18850 at 1958.245 kb on + strand, within PGA1_c18850 at 1958.323 kb on - strand, within PGA1_c18850 at 1958.365 kb on - strand, within PGA1_c18850 at 1958.367 kb on + strand, within PGA1_c18850 at 1958.396 kb on + strand at 1958.463 kb on - strand at 1958.467 kb on + strand at 1958.467 kb on + strand at 1958.467 kb on + strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 1,957,830 - +1.5 1,957,830 - -0.0 1,957,835 - -0.1 1,957,885 - -0.3 1,957,891 + -0.4 1,957,891 + -0.1 1,957,891 + -1.3 1,957,891 + +1.0 1,957,899 - +0.1 1,957,900 - +0.2 1,958,018 - -0.7 1,958,083 + -0.9 1,958,083 + +0.0 1,958,091 + +0.2 1,958,091 + -0.3 1,958,099 - +0.4 1,958,099 - -0.8 1,958,099 - +0.1 1,958,137 + PGA1_c18850 0.12 -0.7 1,958,151 - PGA1_c18850 0.16 +1.6 1,958,242 + PGA1_c18850 0.45 +1.2 1,958,245 + PGA1_c18850 0.46 +0.2 1,958,323 - PGA1_c18850 0.71 -0.2 1,958,365 - PGA1_c18850 0.85 +0.3 1,958,367 + PGA1_c18850 0.85 +0.4 1,958,396 + +1.2 1,958,463 - +1.2 1,958,467 + -0.2 1,958,467 + +1.2 1,958,467 + -2.7 1,958,475 - -0.3 1,958,475 - -0.3 1,958,475 - -1.2 1,958,475 - +0.3 1,958,475 - +0.7 1,958,475 - -0.5 1,958,475 - +0.8 1,958,475 - -0.1 1,958,475 - +0.2 1,958,475 - -1.4 1,958,475 - -0.5 1,958,475 - -0.6 1,958,475 - -0.5 1,958,475 - +0.3 1,958,475 - +0.0 1,958,475 - -1.7 1,958,475 - -0.3 1,958,475 - -1.5
Or see this region's nucleotide sequence