Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14760

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c14740 and PGA1_c14750 are separated by 2 nucleotidesPGA1_c14750 and PGA1_c14760 overlap by 4 nucleotidesPGA1_c14760 and PGA1_c14770 are separated by 191 nucleotides PGA1_c14740: PGA1_c14740 - competence/damage-inducible protein CinA C-terminal domain, at 1,527,474 to 1,527,956 _c14740 PGA1_c14750: PGA1_c14750 - phosphatidylglycerophosphatase, at 1,527,959 to 1,528,465 _c14750 PGA1_c14760: PGA1_c14760 - bifunctional enzyme IspDF, at 1,528,462 to 1,529,682 _c14760 PGA1_c14770: PGA1_c14770 - tRNA-dihydrouridine synthase DusB, at 1,529,874 to 1,530,887 _c14770 Position (kb) 1528 1529 1530Strain fitness (log2 ratio) -2 -1 0 1 2at 1527.467 kb on - strandat 1527.526 kb on - strand, within PGA1_c14740at 1527.602 kb on + strand, within PGA1_c14740at 1527.611 kb on + strand, within PGA1_c14740at 1527.611 kb on + strand, within PGA1_c14740at 1527.619 kb on - strand, within PGA1_c14740at 1527.619 kb on - strand, within PGA1_c14740at 1527.641 kb on + strand, within PGA1_c14740at 1527.651 kb on + strand, within PGA1_c14740at 1527.687 kb on + strand, within PGA1_c14740at 1527.820 kb on - strand, within PGA1_c14740at 1527.830 kb on - strand, within PGA1_c14740at 1527.835 kb on + strand, within PGA1_c14740at 1527.862 kb on - strand, within PGA1_c14740at 1527.928 kb on + strandat 1527.944 kb on - strandat 1528.957 kb on - strand, within PGA1_c14760at 1529.660 kb on + strandat 1529.716 kb on + strandat 1529.753 kb on - strandat 1529.805 kb on + strandat 1529.898 kb on + strandat 1530.026 kb on + strand, within PGA1_c14770at 1530.026 kb on + strand, within PGA1_c14770at 1530.034 kb on - strand, within PGA1_c14770at 1530.034 kb on - strand, within PGA1_c14770at 1530.074 kb on + strand, within PGA1_c14770at 1530.358 kb on + strand, within PGA1_c14770at 1530.363 kb on + strand, within PGA1_c14770at 1530.371 kb on - strand, within PGA1_c14770at 1530.443 kb on + strand, within PGA1_c14770at 1530.451 kb on - strand, within PGA1_c14770at 1530.487 kb on - strand, within PGA1_c14770at 1530.532 kb on - strand, within PGA1_c14770at 1530.661 kb on - strand, within PGA1_c14770

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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1,527,467 - -0.7
1,527,526 - PGA1_c14740 0.11 +2.5
1,527,602 + PGA1_c14740 0.27 +0.8
1,527,611 + PGA1_c14740 0.28 +0.9
1,527,611 + PGA1_c14740 0.28 +0.4
1,527,619 - PGA1_c14740 0.30 +0.0
1,527,619 - PGA1_c14740 0.30 +0.3
1,527,641 + PGA1_c14740 0.35 -1.2
1,527,651 + PGA1_c14740 0.37 +0.3
1,527,687 + PGA1_c14740 0.44 +0.8
1,527,820 - PGA1_c14740 0.72 -0.4
1,527,830 - PGA1_c14740 0.74 +0.6
1,527,835 + PGA1_c14740 0.75 -0.5
1,527,862 - PGA1_c14740 0.80 -0.7
1,527,928 + +0.3
1,527,944 - -0.2
1,528,957 - PGA1_c14760 0.41 +0.5
1,529,660 + -1.1
1,529,716 + +0.0
1,529,753 - -0.7
1,529,805 + -0.2
1,529,898 + +0.3
1,530,026 + PGA1_c14770 0.15 -0.2
1,530,026 + PGA1_c14770 0.15 -0.0
1,530,034 - PGA1_c14770 0.16 -2.0
1,530,034 - PGA1_c14770 0.16 -0.1
1,530,074 + PGA1_c14770 0.20 -0.4
1,530,358 + PGA1_c14770 0.48 -0.4
1,530,363 + PGA1_c14770 0.48 +1.6
1,530,371 - PGA1_c14770 0.49 -1.0
1,530,443 + PGA1_c14770 0.56 +0.2
1,530,451 - PGA1_c14770 0.57 +0.8
1,530,487 - PGA1_c14770 0.60 +0.4
1,530,532 - PGA1_c14770 0.65 -1.1
1,530,661 - PGA1_c14770 0.78 -0.7

Or see this region's nucleotide sequence