Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS10855

Experiment: MRS + kanamycin Time48hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MRS + kanamycin Time48hr
170,369	+		BBR_RS10850	0.60	-1.1
170,377	-		BBR_RS10850	0.60	-3.8
170,390	+		BBR_RS10850	0.61	-0.0
170,408	-		BBR_RS10850	0.62	-1.9
170,408	-		BBR_RS10850	0.62	+0.3
170,413	+		BBR_RS10850	0.62	-0.7
170,413	+		BBR_RS10850	0.62	-0.5
170,420	-		BBR_RS10850	0.62	-0.7
170,422	+		BBR_RS10850	0.62	-2.6
170,422	+		BBR_RS10850	0.62	+0.8
170,422	+		BBR_RS10850	0.62	-2.9
170,422	+		BBR_RS10850	0.62	+0.8
170,456	+		BBR_RS10850	0.64	+1.0
170,456	+		BBR_RS10850	0.64	+0.1
170,461	+		BBR_RS10850	0.65	+1.0
170,481	+		BBR_RS10850	0.66	+0.3
170,481	+		BBR_RS10850	0.66	-2.4
170,512	+		BBR_RS10850	0.67	-1.8
170,512	+		BBR_RS10850	0.67	+1.0
170,520	+		BBR_RS10850	0.68	+0.8
170,520	+		BBR_RS10850	0.68	-0.7
170,520	+		BBR_RS10850	0.68	+0.8
170,520	+		BBR_RS10850	0.68	-0.3
170,528	-		BBR_RS10850	0.68	-1.3
170,528	-		BBR_RS10850	0.68	+1.3
170,534	+		BBR_RS10850	0.69	+2.7
170,543	-		BBR_RS10850	0.69	+0.3
170,549	+		BBR_RS10850	0.69	-0.5
170,549	+		BBR_RS10850	0.69	+0.3
170,549	+		BBR_RS10850	0.69	-0.7
170,562	+		BBR_RS10850	0.70	+0.3
170,571	-		BBR_RS10850	0.71	-1.7
170,572	+		BBR_RS10850	0.71	+0.9
170,572	+		BBR_RS10850	0.71	-0.9
170,580	-		BBR_RS10850	0.71	+0.7
170,587	+		BBR_RS10850	0.71	-0.2
170,589	-		BBR_RS10850	0.72	-1.1
170,595	-		BBR_RS10850	0.72	+0.0
170,603	-		BBR_RS10850	0.72	+1.3
170,603	-		BBR_RS10850	0.72	+1.3
170,610	+		BBR_RS10850	0.73	+0.1
170,617	+		BBR_RS10850	0.73	-0.5
170,617	+		BBR_RS10850	0.73	+0.3
170,617	+		BBR_RS10850	0.73	-2.0
170,618	-		BBR_RS10850	0.73	-0.0
170,623	+		BBR_RS10850	0.73	+2.3
170,650	+		BBR_RS10850	0.75	-2.1
170,670	-		BBR_RS10850	0.76	+0.3
170,678	-		BBR_RS10850	0.76	-1.4
170,688	+		BBR_RS10850	0.77	-0.8
170,696	-		BBR_RS10850	0.77	-1.5
170,697	+		BBR_RS10850	0.77	+0.6
170,735	+		BBR_RS10850	0.79	+0.3
170,735	+		BBR_RS10850	0.79	-2.7
170,735	-		BBR_RS10850	0.79	-2.8
170,742	+		BBR_RS10850	0.80	-0.7
170,742	+		BBR_RS10850	0.80	+0.2
170,743	-		BBR_RS10850	0.80	+1.6
170,743	-		BBR_RS10850	0.80	-3.9
170,769	-		BBR_RS10850	0.81	+0.3
170,798	+		BBR_RS10850	0.83	-3.2
170,798	+		BBR_RS10850	0.83	-1.2
170,798	+		BBR_RS10850	0.83	+2.3
170,798	-		BBR_RS10850	0.83	+0.9
170,806	-		BBR_RS10850	0.83	-0.3
170,859	+		BBR_RS10850	0.86	+0.6
170,860	-		BBR_RS10850	0.86	+1.3
170,899	+		BBR_RS10850	0.88	-0.1
170,901	-		BBR_RS10850	0.88	+2.9
170,915	+		BBR_RS10850	0.89	+0.3
170,915	+		BBR_RS10850	0.89	-1.3
170,915	+		BBR_RS10850	0.89	+0.2
170,915	+		BBR_RS10850	0.89	+2.6
170,934	+				-0.1
170,940	-				+1.3
170,942	-				+0.3
170,942	-				+1.6
170,973	-				+0.8
170,975	-				+1.0
170,988	-				+0.3
170,990	+				+2.6
170,995	+				-3.9
170,995	+				-2.3
171,010	+				-0.3
171,010	+				-0.9
171,016	+				+0.0
171,018	-				+0.3
171,018	-				-2.2
171,018	-				-1.3
171,024	+				-3.2
171,029	+				+1.9
171,029	+				+0.6
171,029	+				-1.3
171,032	-				-0.5
171,034	+				+0.3
171,037	-				+1.5
171,037	-				-2.1
171,037	-				+1.9
171,037	-				+1.0
171,042	-				-0.4
171,048	-				+1.1
171,048	-				-0.7
171,049	+				-1.8
171,061	+				-0.2
171,062	-				+2.0
171,069	-				-4.1
171,073	+				+1.9
171,100	+				-0.7
171,100	+				+0.9
171,100	+				-0.1
171,106	+				+1.7
171,120	+				-1.0
171,120	+				+1.9
171,120	+				+0.2
171,128	-				+0.2
171,128	-				+1.1
171,128	-				+0.1
171,128	-				-0.4
171,128	-				+0.7
171,128	-				+0.5
171,128	-				+1.3
171,128	-				-0.5
171,128	-				-0.9
171,156	+				+0.3
171,156	+				+0.1
171,156	+				-0.7
171,156	+				-3.6
171,157	+				-0.2
171,158	-				-1.1
171,164	-				-0.7
171,164	-				-1.7
171,164	-				-0.7
171,189	+				+2.3
171,222	+				+0.7
171,296	-				-0.8
171,322	+				-1.7
171,323	+				-0.9
171,333	-				+2.3
171,336	-				+0.9
171,337	+				-0.1
171,347	+				-2.0
171,350	+				-0.0
171,355	+				+2.6
171,355	-				+2.1
171,379	-				-2.6
171,379	-				+3.5
171,402	-				-1.7
171,416	+				+1.0
171,434	-				+1.3
171,448	-				-2.0
171,449	+				+0.3
171,527	-		BBR_RS10855	0.17	-0.5
171,527	-		BBR_RS10855	0.17	+0.3
171,540	+		BBR_RS10855	0.18	+0.3
171,541	-		BBR_RS10855	0.18	+0.3
171,548	-		BBR_RS10855	0.19	+0.3
171,551	+		BBR_RS10855	0.19	+3.9
171,575	+		BBR_RS10855	0.22	-0.7
171,583	-		BBR_RS10855	0.23	+1.3
171,626	-		BBR_RS10855	0.27	-1.7
171,638	+		BBR_RS10855	0.28	-3.2
171,646	-		BBR_RS10855	0.29	+0.3
171,646	-		BBR_RS10855	0.29	-1.2
171,671	+		BBR_RS10855	0.32	-1.9
171,671	+		BBR_RS10855	0.32	-3.0
171,671	+		BBR_RS10855	0.32	+1.9
171,671	+		BBR_RS10855	0.32	-1.0
171,679	+		BBR_RS10855	0.33	-1.9
171,679	-		BBR_RS10855	0.33	-0.7
171,717	+		BBR_RS10855	0.37	+2.1
171,731	+		BBR_RS10855	0.38	-0.5
171,731	+		BBR_RS10855	0.38	-0.4
171,731	+		BBR_RS10855	0.38	-2.1
171,731	+		BBR_RS10855	0.38	+1.3
171,747	+		BBR_RS10855	0.40	-1.7
171,755	-		BBR_RS10855	0.41	+0.9
171,755	-		BBR_RS10855	0.41	-1.6
171,755	-		BBR_RS10855	0.41	-1.1
171,755	-		BBR_RS10855	0.41	+0.3
171,786	+		BBR_RS10855	0.44	-1.5
171,792	+		BBR_RS10855	0.44	-2.2
171,793	+		BBR_RS10855	0.44	-2.5
171,800	-		BBR_RS10855	0.45	-1.5
171,800	-		BBR_RS10855	0.45	-1.7
171,800	-		BBR_RS10855	0.45	+1.1
171,808	+		BBR_RS10855	0.46	-1.9
171,819	-		BBR_RS10855	0.47	+0.3
171,826	+		BBR_RS10855	0.48	+1.2
171,840	-		BBR_RS10855	0.49	-1.0
171,842	+		BBR_RS10855	0.50	+1.5
171,842	+		BBR_RS10855	0.50	-1.1
171,842	+		BBR_RS10855	0.50	-2.0
171,842	+		BBR_RS10855	0.50	-3.0
171,850	-		BBR_RS10855	0.50	+0.3
171,850	-		BBR_RS10855	0.50	+0.6
171,850	-		BBR_RS10855	0.50	+0.3
171,851	-		BBR_RS10855	0.51	+2.8
171,851	-		BBR_RS10855	0.51	-0.8
171,853	-		BBR_RS10855	0.51	-1.1
171,863	-		BBR_RS10855	0.52	+0.8
171,874	+		BBR_RS10855	0.53	-2.5
171,876	+		BBR_RS10855	0.53	-0.8
171,876	+		BBR_RS10855	0.53	-0.1
171,884	+		BBR_RS10855	0.54	-0.5
171,890	+		BBR_RS10855	0.55	+0.3
171,891	-		BBR_RS10855	0.55	+0.6
171,919	+		BBR_RS10855	0.58	+1.2
171,924	+		BBR_RS10855	0.58	+2.5
171,924	+		BBR_RS10855	0.58	+0.3
171,934	+		BBR_RS10855	0.59	-1.7
171,936	-		BBR_RS10855	0.59	-0.7
171,944	+		BBR_RS10855	0.60	-2.3
171,947	+		BBR_RS10855	0.61	-0.2
171,952	-		BBR_RS10855	0.61	+2.6
171,961	-		BBR_RS10855	0.62	+0.3
171,961	-		BBR_RS10855	0.62	-2.3
171,961	-		BBR_RS10855	0.62	-1.0
171,970	-		BBR_RS10855	0.63	+0.3
171,975	-		BBR_RS10855	0.63	-1.7
171,975	-		BBR_RS10855	0.63	+2.1
171,980	+		BBR_RS10855	0.64	+1.6
171,980	+		BBR_RS10855	0.64	+1.1
171,980	+		BBR_RS10855	0.64	-1.7
171,983	-		BBR_RS10855	0.64	+0.3
171,995	-		BBR_RS10855	0.66	+1.3
172,009	+		BBR_RS10855	0.67	+1.9
172,017	-		BBR_RS10855	0.68	-3.1
172,052	+		BBR_RS10855	0.71	+2.6
172,067	-		BBR_RS10855	0.73	-0.5
172,069	+		BBR_RS10855	0.73	-1.5
172,077	-		BBR_RS10855	0.74	-1.0
172,077	-		BBR_RS10855	0.74	-2.9
172,084	+		BBR_RS10855	0.75	-1.3
172,084	+		BBR_RS10855	0.75	-1.3
172,085	+		BBR_RS10855	0.75	-0.7
172,085	-		BBR_RS10855	0.75	-0.9
172,085	-		BBR_RS10855	0.75	+2.5
172,085	-		BBR_RS10855	0.75	-1.3
172,091	+		BBR_RS10855	0.76	+0.3
172,092	-		BBR_RS10855	0.76	+0.3
172,121	+		BBR_RS10855	0.79	+1.2
172,121	+		BBR_RS10855	0.79	-0.0
172,129	-		BBR_RS10855	0.79	-0.3
172,129	-		BBR_RS10855	0.79	-2.9
172,131	-		BBR_RS10855	0.80	-1.5
172,131	-		BBR_RS10855	0.80	-2.4
172,170	+		BBR_RS10855	0.84	+4.8
172,170	-		BBR_RS10855	0.84	-1.2
172,173	+		BBR_RS10855	0.84	-0.1
172,181	+		BBR_RS10855	0.85	+0.3
172,195	-		BBR_RS10855	0.86	-0.3
172,203	-		BBR_RS10855	0.87	+0.5
172,207	+		BBR_RS10855	0.88	+4.6
172,217	+		BBR_RS10855	0.89	+0.3
172,223	-		BBR_RS10855	0.89	+0.8
172,225	-		BBR_RS10855	0.89	-1.7
172,225	-		BBR_RS10855	0.89	-1.3
172,258	+				+1.3
172,258	+				-2.3
172,299	-				-0.2
172,306	+				+0.3
172,306	+				+2.6
172,306	+				-1.7
172,312	-				-0.7
172,382	-				+1.4
172,428	+				+0.9
172,428	+				+1.0
172,432	-				-1.0
172,436	-				+0.3
172,438	+				+0.5
172,438	+				-1.2
172,441	-				-1.0
172,446	+				-1.4
172,446	+				+2.6
172,456	+				-0.9
172,466	-				-2.7
172,484	-				+1.6
172,521	-				-2.0
172,521	-				+0.3
172,544	+				-0.7
172,552	-				-2.0
172,552	-				-0.7
172,552	-				-1.9
172,552	-				+0.3
172,554	+				-0.5
172,554	-				+1.3
172,592	-				-2.5
172,592	-				-2.4
172,605	-				+2.8
172,605	-				-2.0
172,615	-				-0.1
172,615	-				-0.0
172,617	+				+2.1
172,621	+				-0.3
172,657	+				-0.8
172,657	+				-0.4
172,665	-				+0.3
172,667	-				-1.3
172,670	+				+0.5
172,678	-				+1.3
172,678	-				-0.3
172,693	+				-0.8
172,701	-				-1.2
172,701	-				+0.6
172,701	-				+0.2
172,701	-				+0.3
172,707	-				+2.3
172,708	+				-1.7
172,709	-				-0.1
172,716	-				-1.8
172,716	-				+0.3
172,717	+				+0.3
172,719	-				-0.0
172,721	-				-0.3
172,721	-				+0.1
172,725	-				-0.3
172,753	+				-0.1
172,753	+				+0.0
172,764	+				+0.7
172,764	-				-4.2
172,772	-				+1.9
172,803	-				-0.4
172,823	-				-1.3
172,831	+				-1.3
172,842	+				+2.9
172,847	+				-1.7
172,850	-				+1.9
172,850	-				+0.3
172,850	-				-2.3
172,852	-				-1.7
172,854	+				+1.9
172,857	-				-0.3
172,876	-		BBR_RS10860	0.11	-1.3
172,879	+		BBR_RS10860	0.11	-1.7
172,879	+		BBR_RS10860	0.11	+0.3
172,879	+		BBR_RS10860	0.11	+0.3
172,887	-		BBR_RS10860	0.11	-0.7
172,900	-		BBR_RS10860	0.12	+0.3
172,915	-		BBR_RS10860	0.12	+0.2
172,915	-		BBR_RS10860	0.12	+0.5
172,915	-		BBR_RS10860	0.12	+0.6
172,915	-		BBR_RS10860	0.12	+0.3
172,915	-		BBR_RS10860	0.12	+0.3
172,915	-		BBR_RS10860	0.12	-1.5
172,915	-		BBR_RS10860	0.12	+0.8
172,921	-		BBR_RS10860	0.13	-1.5
172,931	+		BBR_RS10860	0.13	-3.4
172,931	+		BBR_RS10860	0.13	-0.0
172,935	+		BBR_RS10860	0.13	+1.9
172,939	-		BBR_RS10860	0.13	-2.9
172,939	-		BBR_RS10860	0.13	-1.2
172,943	-		BBR_RS10860	0.14	+0.3
172,960	-		BBR_RS10860	0.14	+0.9
172,967	+		BBR_RS10860	0.15	-0.7
172,967	+		BBR_RS10860	0.15	-1.3
172,967	+		BBR_RS10860	0.15	+0.3
172,975	-		BBR_RS10860	0.15	+1.3
172,975	-		BBR_RS10860	0.15	+1.3
172,975	-		BBR_RS10860	0.15	+2.9
172,987	+		BBR_RS10860	0.16	+0.3
172,995	-		BBR_RS10860	0.16	-2.3
172,995	-		BBR_RS10860	0.16	+1.1
173,019	-		BBR_RS10860	0.17	-2.0
173,028	+		BBR_RS10860	0.18	+1.9
173,044	+		BBR_RS10860	0.18	-2.0
173,045	-		BBR_RS10860	0.18	-1.2
173,045	-		BBR_RS10860	0.18	+0.3
173,050	-		BBR_RS10860	0.19	-1.3
173,068	-		BBR_RS10860	0.19	-1.7
173,068	-		BBR_RS10860	0.19	-0.0
173,078	-		BBR_RS10860	0.20	+0.3
173,084	+		BBR_RS10860	0.20	+2.3
173,098	-		BBR_RS10860	0.21	-1.6
173,108	-		BBR_RS10860	0.21	+1.3
173,110	+		BBR_RS10860	0.21	+0.9
173,110	+		BBR_RS10860	0.21	+1.3
173,113	-		BBR_RS10860	0.21	-1.1
173,113	-		BBR_RS10860	0.21	+0.3
173,118	-		BBR_RS10860	0.22	+1.0
173,118	-		BBR_RS10860	0.22	+1.9
173,118	-		BBR_RS10860	0.22	-1.2
173,123	+		BBR_RS10860	0.22	-2.6
173,125	+		BBR_RS10860	0.22	+0.3
173,131	-		BBR_RS10860	0.22	-0.1
173,159	+		BBR_RS10860	0.23	+0.3
173,159	+		BBR_RS10860	0.23	+1.3
173,159	+		BBR_RS10860	0.23	-0.7
173,159	+		BBR_RS10860	0.23	-1.1
173,160	+		BBR_RS10860	0.23	+1.9
173,161	+		BBR_RS10860	0.24	-0.3
173,167	-		BBR_RS10860	0.24	-0.3
173,167	-		BBR_RS10860	0.24	+0.3
173,167	-		BBR_RS10860	0.24	-0.4
173,170	+		BBR_RS10860	0.24	+0.3
173,170	+		BBR_RS10860	0.24	+0.2
173,170	+		BBR_RS10860	0.24	+1.3
173,170	+		BBR_RS10860	0.24	-1.5
173,170	+		BBR_RS10860	0.24	+0.7
173,178	-		BBR_RS10860	0.24	-1.0
173,178	-		BBR_RS10860	0.24	-1.3
173,178	-		BBR_RS10860	0.24	-1.3
173,178	-		BBR_RS10860	0.24	+0.3
173,178	-		BBR_RS10860	0.24	-1.7
173,178	-		BBR_RS10860	0.24	-1.2
173,178	-		BBR_RS10860	0.24	+0.3
173,188	-		BBR_RS10860	0.25	+0.6
173,188	-		BBR_RS10860	0.25	-2.5
173,198	-		BBR_RS10860	0.25	+0.5
173,198	-		BBR_RS10860	0.25	+0.3
173,201	+		BBR_RS10860	0.25	-0.5
173,205	+		BBR_RS10860	0.26	+3.2
173,224	-		BBR_RS10860	0.26	+0.3
173,233	+		BBR_RS10860	0.27	+3.3
173,233	+		BBR_RS10860	0.27	-2.0
173,241	-		BBR_RS10860	0.27	-2.3
173,241	-		BBR_RS10860	0.27	+0.3
173,241	-		BBR_RS10860	0.27	-0.7
173,241	-		BBR_RS10860	0.27	+2.9
173,242	-		BBR_RS10860	0.27	-0.7
173,281	+		BBR_RS10860	0.29	-0.8
173,283	+		BBR_RS10860	0.29	+0.7
173,283	+		BBR_RS10860	0.29	-1.2
173,283	+		BBR_RS10860	0.29	+0.3
173,296	-		BBR_RS10860	0.30	-0.9
173,301	+		BBR_RS10860	0.30	+0.3
173,306	+		BBR_RS10860	0.30	-0.9
173,306	+		BBR_RS10860	0.30	-0.4
173,306	+		BBR_RS10860	0.30	-0.5
173,316	+		BBR_RS10860	0.31	+0.3
173,316	-		BBR_RS10860	0.31	+0.3