Experiment: SBM - no RNA protect
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0479 and SO0480 are separated by 98 nucleotides SO0480 and SO0481 are separated by 93 nucleotides SO0481 and nrfG are separated by 93 nucleotides
SO0479: SO0479 - cytochrome c, putative (NCBI ptt file), at 502,638 to 504,767
SO0479
SO0480: SO0480 - conserved domain protein (NCBI ptt file), at 504,866 to 505,306
SO0480
SO0481: SO0481 - peptidyl-prolyl cis-trans isomerase, FKBP-type (NCBI ptt file), at 505,400 to 506,179
SO0481
SO0482: nrfG - formate-dependent nitrite reductase, nrfG protein (NCBI ptt file), at 506,273 to 506,947
nrfG
Position (kb) 504
505
506 Strain fitness (log2 ratio) -2
-1
0
1
2 at 503.930 kb on - strand, within SO0479 at 503.931 kb on + strand, within SO0479 at 503.981 kb on - strand, within SO0479 at 503.981 kb on - strand, within SO0479 at 503.981 kb on - strand, within SO0479 at 504.002 kb on + strand, within SO0479 at 504.011 kb on + strand, within SO0479 at 504.013 kb on + strand, within SO0479 at 504.106 kb on + strand, within SO0479 at 504.120 kb on + strand, within SO0479 at 504.128 kb on - strand, within SO0479 at 504.244 kb on - strand, within SO0479 at 504.254 kb on + strand, within SO0479 at 504.262 kb on + strand, within SO0479 at 504.262 kb on - strand, within SO0479 at 504.270 kb on - strand, within SO0479 at 504.287 kb on - strand, within SO0479 at 504.342 kb on - strand, within SO0479 at 504.343 kb on + strand, within SO0479 at 504.351 kb on - strand, within SO0479 at 504.422 kb on + strand, within SO0479 at 504.430 kb on - strand, within SO0479 at 504.430 kb on - strand, within SO0479 at 504.483 kb on + strand, within SO0479 at 504.483 kb on + strand, within SO0479 at 504.491 kb on - strand, within SO0479 at 504.535 kb on + strand, within SO0479 at 504.542 kb on - strand, within SO0479 at 504.543 kb on - strand, within SO0479 at 504.626 kb on - strand at 504.660 kb on - strand at 504.705 kb on - strand at 504.715 kb on - strand at 504.723 kb on + strand at 504.723 kb on + strand at 504.731 kb on - strand at 504.772 kb on + strand at 504.780 kb on - strand at 504.791 kb on + strand at 504.927 kb on + strand, within SO0480 at 504.927 kb on - strand, within SO0480 at 504.963 kb on + strand, within SO0480 at 505.034 kb on + strand, within SO0480 at 505.094 kb on - strand, within SO0480 at 505.130 kb on + strand, within SO0480 at 505.144 kb on - strand, within SO0480 at 505.378 kb on - strand at 505.389 kb on - strand at 505.445 kb on + strand at 505.506 kb on - strand, within SO0481 at 505.520 kb on + strand, within SO0481 at 505.576 kb on - strand, within SO0481 at 505.616 kb on + strand, within SO0481 at 505.616 kb on + strand, within SO0481 at 505.812 kb on + strand, within SO0481 at 505.812 kb on + strand, within SO0481 at 505.812 kb on + strand, within SO0481 at 505.851 kb on - strand, within SO0481 at 505.858 kb on + strand, within SO0481 at 505.858 kb on + strand, within SO0481 at 505.866 kb on - strand, within SO0481 at 505.889 kb on - strand, within SO0481 at 505.992 kb on + strand, within SO0481 at 505.992 kb on + strand, within SO0481 at 506.013 kb on + strand, within SO0481 at 506.193 kb on - strand at 506.198 kb on + strand at 506.205 kb on - strand at 506.222 kb on + strand at 506.243 kb on + strand at 506.273 kb on - strand at 506.280 kb on + strand at 506.280 kb on + strand at 506.280 kb on + strand at 506.280 kb on + strand at 506.288 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction SBM - no RNA protect remove 503,930 - SO0479 0.61 -0.3 503,931 + SO0479 0.61 -1.2 503,981 - SO0479 0.63 +0.3 503,981 - SO0479 0.63 -1.8 503,981 - SO0479 0.63 -0.3 504,002 + SO0479 0.64 -0.4 504,011 + SO0479 0.64 -2.5 504,013 + SO0479 0.65 -0.7 504,106 + SO0479 0.69 +0.7 504,120 + SO0479 0.70 +0.7 504,128 - SO0479 0.70 +0.6 504,244 - SO0479 0.75 +1.0 504,254 + SO0479 0.76 +0.3 504,262 + SO0479 0.76 -0.4 504,262 - SO0479 0.76 +0.1 504,270 - SO0479 0.77 +0.9 504,287 - SO0479 0.77 -0.2 504,342 - SO0479 0.80 +1.0 504,343 + SO0479 0.80 +1.3 504,351 - SO0479 0.80 +0.1 504,422 + SO0479 0.84 -0.1 504,430 - SO0479 0.84 +0.4 504,430 - SO0479 0.84 -0.0 504,483 + SO0479 0.87 +0.2 504,483 + SO0479 0.87 +0.7 504,491 - SO0479 0.87 -0.3 504,535 + SO0479 0.89 +0.2 504,542 - SO0479 0.89 -2.6 504,543 - SO0479 0.89 +0.4 504,626 - +0.1 504,660 - +0.6 504,705 - +0.3 504,715 - +0.8 504,723 + -1.2 504,723 + -0.6 504,731 - +0.2 504,772 + +0.0 504,780 - -0.4 504,791 + +0.8 504,927 + SO0480 0.14 +0.2 504,927 - SO0480 0.14 +0.4 504,963 + SO0480 0.22 +0.8 505,034 + SO0480 0.38 +1.0 505,094 - SO0480 0.52 +0.5 505,130 + SO0480 0.60 +0.3 505,144 - SO0480 0.63 -1.8 505,378 - +1.6 505,389 - -0.8 505,445 + +0.7 505,506 - SO0481 0.14 +2.1 505,520 + SO0481 0.15 -0.4 505,576 - SO0481 0.23 +0.7 505,616 + SO0481 0.28 +0.2 505,616 + SO0481 0.28 +0.1 505,812 + SO0481 0.53 +1.7 505,812 + SO0481 0.53 -0.2 505,812 + SO0481 0.53 +0.4 505,851 - SO0481 0.58 +0.0 505,858 + SO0481 0.59 -0.7 505,858 + SO0481 0.59 -0.8 505,866 - SO0481 0.60 +0.2 505,889 - SO0481 0.63 -1.3 505,992 + SO0481 0.76 -0.3 505,992 + SO0481 0.76 +0.0 506,013 + SO0481 0.79 -1.4 506,193 - +0.4 506,198 + +1.2 506,205 - -0.9 506,222 + +0.6 506,243 + +0.2 506,273 - +0.1 506,280 + +0.6 506,280 + -0.4 506,280 + +1.0 506,280 + -0.5 506,288 - -0.1
Or see this region's nucleotide sequence