Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08650 and PGA1_c08660 are separated by 172 nucleotides PGA1_c08660 and PGA1_c08670 are separated by 97 nucleotides PGA1_c08670 and PGA1_c08680 are separated by 79 nucleotides
PGA1_c08650: PGA1_c08650 - homoserine dehydrogenase Hom, at 892,532 to 893,818
_c08650
PGA1_c08660: PGA1_c08660 - hypothetical protein, at 893,991 to 894,320
_c08660
PGA1_c08670: PGA1_c08670 - transcriptional regulator, TetR family, at 894,418 to 895,035
_c08670
PGA1_c08680: PGA1_c08680 - pirin-like protein, at 895,115 to 896,026
_c08680
Position (kb) 893
894
895 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 893.911 kb on + strand at 893.911 kb on + strand at 893.968 kb on - strand at 893.976 kb on + strand at 893.994 kb on + strand at 893.994 kb on + strand at 894.002 kb on - strand at 894.002 kb on - strand at 894.002 kb on - strand at 894.017 kb on - strand at 894.055 kb on - strand, within PGA1_c08660 at 894.055 kb on - strand, within PGA1_c08660 at 894.083 kb on - strand, within PGA1_c08660 at 894.083 kb on - strand, within PGA1_c08660 at 894.098 kb on + strand, within PGA1_c08660 at 894.120 kb on + strand, within PGA1_c08660 at 894.128 kb on - strand, within PGA1_c08660 at 894.128 kb on - strand, within PGA1_c08660 at 894.295 kb on + strand at 894.295 kb on + strand at 894.295 kb on + strand at 894.295 kb on + strand at 894.295 kb on + strand at 894.295 kb on + strand at 894.295 kb on + strand at 894.295 kb on + strand at 894.295 kb on + strand at 894.295 kb on + strand at 894.303 kb on - strand at 894.303 kb on - strand at 894.303 kb on - strand at 894.303 kb on - strand at 894.303 kb on - strand at 894.303 kb on - strand at 894.303 kb on - strand at 894.303 kb on - strand at 894.303 kb on - strand at 894.303 kb on - strand at 894.303 kb on - strand at 894.313 kb on - strand at 894.339 kb on + strand at 894.347 kb on - strand at 894.347 kb on - strand at 894.347 kb on - strand at 894.417 kb on + strand at 894.426 kb on + strand at 894.511 kb on + strand, within PGA1_c08670 at 894.559 kb on + strand, within PGA1_c08670 at 894.561 kb on + strand, within PGA1_c08670 at 894.567 kb on + strand, within PGA1_c08670 at 894.602 kb on - strand, within PGA1_c08670 at 894.603 kb on + strand, within PGA1_c08670 at 894.653 kb on + strand, within PGA1_c08670 at 894.653 kb on + strand, within PGA1_c08670 at 894.658 kb on + strand, within PGA1_c08670 at 894.712 kb on + strand, within PGA1_c08670 at 894.713 kb on - strand, within PGA1_c08670 at 894.720 kb on - strand, within PGA1_c08670 at 894.721 kb on - strand, within PGA1_c08670 at 894.869 kb on + strand, within PGA1_c08670 at 894.877 kb on - strand, within PGA1_c08670 at 895.082 kb on - strand at 895.084 kb on - strand at 895.112 kb on + strand at 895.184 kb on - strand at 895.241 kb on - strand, within PGA1_c08680 at 895.249 kb on + strand, within PGA1_c08680 at 895.257 kb on - strand, within PGA1_c08680 at 895.266 kb on - strand, within PGA1_c08680
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 893,911 + -0.2 893,911 + -0.3 893,968 - -0.4 893,976 + +0.0 893,994 + -2.4 893,994 + +0.8 894,002 - +1.3 894,002 - +0.0 894,002 - -0.9 894,017 - -0.2 894,055 - PGA1_c08660 0.19 -0.6 894,055 - PGA1_c08660 0.19 -0.5 894,083 - PGA1_c08660 0.28 -2.4 894,083 - PGA1_c08660 0.28 -2.4 894,098 + PGA1_c08660 0.32 -0.1 894,120 + PGA1_c08660 0.39 -1.4 894,128 - PGA1_c08660 0.42 +0.1 894,128 - PGA1_c08660 0.42 -2.2 894,295 + -0.6 894,295 + -1.8 894,295 + -1.5 894,295 + -1.3 894,295 + -0.6 894,295 + -1.7 894,295 + -0.7 894,295 + -0.6 894,295 + -2.2 894,295 + -0.1 894,303 - -3.3 894,303 - -1.0 894,303 - -0.4 894,303 - -0.1 894,303 - -1.9 894,303 - -0.5 894,303 - -0.1 894,303 - -0.6 894,303 - -0.0 894,303 - -1.5 894,303 - -0.4 894,313 - -2.1 894,339 + -2.1 894,347 - -0.4 894,347 - -0.9 894,347 - -2.3 894,417 + +0.7 894,426 + +0.9 894,511 + PGA1_c08670 0.15 +1.2 894,559 + PGA1_c08670 0.23 -0.3 894,561 + PGA1_c08670 0.23 -0.1 894,567 + PGA1_c08670 0.24 +0.3 894,602 - PGA1_c08670 0.30 -0.7 894,603 + PGA1_c08670 0.30 -1.5 894,653 + PGA1_c08670 0.38 +0.5 894,653 + PGA1_c08670 0.38 -0.2 894,658 + PGA1_c08670 0.39 +0.0 894,712 + PGA1_c08670 0.48 +0.8 894,713 - PGA1_c08670 0.48 -0.2 894,720 - PGA1_c08670 0.49 +0.3 894,721 - PGA1_c08670 0.49 +0.3 894,869 + PGA1_c08670 0.73 -1.9 894,877 - PGA1_c08670 0.74 -0.1 895,082 - +0.1 895,084 - +0.7 895,112 + -0.2 895,184 - -0.3 895,241 - PGA1_c08680 0.14 +0.4 895,249 + PGA1_c08680 0.15 -0.1 895,257 - PGA1_c08680 0.16 -1.0 895,266 - PGA1_c08680 0.17 +0.1
Or see this region's nucleotide sequence