Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08480 and PGA1_c08490 are separated by 27 nucleotides PGA1_c08490 and PGA1_c08500 are separated by 235 nucleotides PGA1_c08500 and PGA1_c08510 are separated by 13 nucleotides PGA1_c08510 and PGA1_c08520 overlap by 8 nucleotides
PGA1_c08480: PGA1_c08480 - NUDIX hydrolase-like protein, at 876,705 to 877,472
_c08480
PGA1_c08490: PGA1_c08490 - Uncharacterized protein conserved in bacteria, at 877,500 to 877,916
_c08490
PGA1_c08500: PGA1_c08500 - hypothetical protein, at 878,152 to 878,655
_c08500
PGA1_c08510: PGA1_c08510 - RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup), at 878,669 to 879,328
_c08510
PGA1_c08520: PGA1_c08520 - hypothetical protein, at 879,321 to 879,797
_c08520
Position (kb) 878
879 Strain fitness (log2 ratio) -2
-1
0
1 at 877.170 kb on + strand, within PGA1_c08480 at 877.233 kb on - strand, within PGA1_c08480 at 877.423 kb on + strand at 877.558 kb on + strand, within PGA1_c08490 at 877.558 kb on + strand, within PGA1_c08490 at 877.558 kb on + strand, within PGA1_c08490 at 877.558 kb on + strand, within PGA1_c08490 at 877.657 kb on + strand, within PGA1_c08490 at 877.713 kb on + strand, within PGA1_c08490 at 877.963 kb on + strand at 877.983 kb on + strand at 877.986 kb on - strand at 878.012 kb on - strand at 878.021 kb on + strand at 878.029 kb on + strand at 878.083 kb on + strand at 878.267 kb on + strand, within PGA1_c08500 at 878.329 kb on + strand, within PGA1_c08500 at 878.401 kb on + strand, within PGA1_c08500 at 878.401 kb on + strand, within PGA1_c08500 at 878.404 kb on - strand, within PGA1_c08500 at 878.409 kb on - strand, within PGA1_c08500 at 878.474 kb on + strand, within PGA1_c08500 at 878.512 kb on + strand, within PGA1_c08500 at 878.520 kb on - strand, within PGA1_c08500 at 878.553 kb on - strand, within PGA1_c08500 at 878.606 kb on + strand at 878.621 kb on + strand at 878.719 kb on - strand at 878.736 kb on - strand, within PGA1_c08510 at 878.759 kb on + strand, within PGA1_c08510 at 879.305 kb on + strand at 879.560 kb on + strand, within PGA1_c08520
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 877,170 + PGA1_c08480 0.61 +0.2 877,233 - PGA1_c08480 0.69 -2.5 877,423 + +0.0 877,558 + PGA1_c08490 0.14 -0.2 877,558 + PGA1_c08490 0.14 -1.1 877,558 + PGA1_c08490 0.14 +0.7 877,558 + PGA1_c08490 0.14 -0.7 877,657 + PGA1_c08490 0.38 +0.2 877,713 + PGA1_c08490 0.51 -1.9 877,963 + +0.8 877,983 + -2.4 877,986 - -1.2 878,012 - +0.5 878,021 + -0.2 878,029 + -0.1 878,083 + -1.3 878,267 + PGA1_c08500 0.23 +0.2 878,329 + PGA1_c08500 0.35 -1.5 878,401 + PGA1_c08500 0.49 -1.6 878,401 + PGA1_c08500 0.49 +0.8 878,404 - PGA1_c08500 0.50 -0.3 878,409 - PGA1_c08500 0.51 -1.7 878,474 + PGA1_c08500 0.64 +0.5 878,512 + PGA1_c08500 0.71 -0.5 878,520 - PGA1_c08500 0.73 -1.0 878,553 - PGA1_c08500 0.80 -1.8 878,606 + -1.1 878,621 + -0.9 878,719 - +0.0 878,736 - PGA1_c08510 0.10 +0.0 878,759 + PGA1_c08510 0.14 -0.1 879,305 + -0.1 879,560 + PGA1_c08520 0.50 +1.4
Or see this region's nucleotide sequence