Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07190

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07180 and PGA1_c07190 are separated by 226 nucleotidesPGA1_c07190 and PGA1_c07200 are separated by 57 nucleotides PGA1_c07180: PGA1_c07180 - 2-hydroxy-3-oxopropionate reductase-like protein, at 738,083 to 739,048 _c07180 PGA1_c07190: PGA1_c07190 - transcriptional regulator, IclR family, at 739,275 to 740,348 _c07190 PGA1_c07200: PGA1_c07200 - phytanoyl-CoA dioxygenase-like protein, at 740,406 to 741,590 _c07200 Position (kb) 739 740 741Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 738.324 kb on + strand, within PGA1_c07180at 738.324 kb on + strand, within PGA1_c07180at 738.324 kb on + strand, within PGA1_c07180at 738.324 kb on + strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.334 kb on + strand, within PGA1_c07180at 738.336 kb on + strand, within PGA1_c07180at 738.355 kb on + strand, within PGA1_c07180at 738.363 kb on + strand, within PGA1_c07180at 738.437 kb on + strand, within PGA1_c07180at 738.466 kb on + strand, within PGA1_c07180at 738.469 kb on - strand, within PGA1_c07180at 738.491 kb on + strand, within PGA1_c07180at 738.491 kb on + strand, within PGA1_c07180at 738.509 kb on + strand, within PGA1_c07180at 738.517 kb on - strand, within PGA1_c07180at 738.517 kb on - strand, within PGA1_c07180at 738.559 kb on + strand, within PGA1_c07180at 738.567 kb on - strand, within PGA1_c07180at 738.594 kb on - strand, within PGA1_c07180at 738.632 kb on + strand, within PGA1_c07180at 738.633 kb on - strand, within PGA1_c07180at 738.633 kb on - strand, within PGA1_c07180at 738.656 kb on + strand, within PGA1_c07180at 738.690 kb on + strand, within PGA1_c07180at 738.707 kb on + strand, within PGA1_c07180at 738.715 kb on - strand, within PGA1_c07180at 738.750 kb on + strand, within PGA1_c07180at 738.766 kb on + strand, within PGA1_c07180at 738.786 kb on + strand, within PGA1_c07180at 738.794 kb on - strand, within PGA1_c07180at 738.856 kb on + strand, within PGA1_c07180at 738.861 kb on + strand, within PGA1_c07180at 738.861 kb on + strand, within PGA1_c07180at 738.863 kb on + strand, within PGA1_c07180at 738.928 kb on + strand, within PGA1_c07180at 738.976 kb on - strandat 738.981 kb on - strandat 738.994 kb on + strandat 738.994 kb on + strandat 739.002 kb on - strandat 739.025 kb on - strandat 739.151 kb on + strandat 739.156 kb on + strandat 739.159 kb on - strandat 739.159 kb on - strandat 739.159 kb on - strandat 739.159 kb on - strandat 739.159 kb on - strandat 739.161 kb on + strandat 739.161 kb on + strandat 739.188 kb on + strandat 739.199 kb on + strandat 739.209 kb on + strandat 739.248 kb on + strandat 739.261 kb on - strandat 739.290 kb on + strandat 739.290 kb on + strandat 739.290 kb on + strandat 739.290 kb on + strandat 739.290 kb on + strandat 739.296 kb on + strandat 739.298 kb on - strandat 739.298 kb on - strandat 739.298 kb on - strandat 739.298 kb on - strandat 739.304 kb on - strandat 739.339 kb on + strandat 739.357 kb on + strandat 739.365 kb on - strandat 739.365 kb on - strandat 739.376 kb on + strandat 739.378 kb on + strandat 739.389 kb on + strand, within PGA1_c07190at 739.444 kb on + strand, within PGA1_c07190at 739.452 kb on - strand, within PGA1_c07190at 739.466 kb on - strand, within PGA1_c07190at 739.487 kb on - strand, within PGA1_c07190at 739.493 kb on + strand, within PGA1_c07190at 739.501 kb on + strand, within PGA1_c07190at 739.501 kb on + strand, within PGA1_c07190at 739.501 kb on + strand, within PGA1_c07190at 739.501 kb on + strand, within PGA1_c07190at 739.501 kb on - strand, within PGA1_c07190at 739.509 kb on - strand, within PGA1_c07190at 739.509 kb on - strand, within PGA1_c07190at 739.509 kb on - strand, within PGA1_c07190at 739.509 kb on - strand, within PGA1_c07190at 739.511 kb on - strand, within PGA1_c07190at 739.526 kb on + strand, within PGA1_c07190at 739.569 kb on + strand, within PGA1_c07190at 739.577 kb on - strand, within PGA1_c07190at 739.590 kb on - strand, within PGA1_c07190at 739.605 kb on + strand, within PGA1_c07190at 739.613 kb on - strand, within PGA1_c07190at 739.613 kb on - strand, within PGA1_c07190at 739.695 kb on + strand, within PGA1_c07190at 739.695 kb on + strand, within PGA1_c07190at 739.695 kb on + strand, within PGA1_c07190at 739.695 kb on + strand, within PGA1_c07190at 739.695 kb on + strand, within PGA1_c07190at 739.695 kb on + strand, within PGA1_c07190at 739.695 kb on + strand, within PGA1_c07190at 739.703 kb on - strand, within PGA1_c07190at 739.752 kb on + strand, within PGA1_c07190at 739.912 kb on + strand, within PGA1_c07190at 739.941 kb on + strand, within PGA1_c07190at 739.943 kb on + strand, within PGA1_c07190at 739.945 kb on - strand, within PGA1_c07190at 739.957 kb on - strand, within PGA1_c07190at 739.985 kb on + strand, within PGA1_c07190at 739.985 kb on + strand, within PGA1_c07190at 739.985 kb on + strand, within PGA1_c07190at 739.993 kb on - strand, within PGA1_c07190at 740.045 kb on - strand, within PGA1_c07190at 740.048 kb on + strand, within PGA1_c07190at 740.056 kb on - strand, within PGA1_c07190at 740.056 kb on - strand, within PGA1_c07190at 740.058 kb on + strand, within PGA1_c07190at 740.066 kb on - strand, within PGA1_c07190at 740.216 kb on + strand, within PGA1_c07190at 740.247 kb on + strandat 740.247 kb on + strandat 740.341 kb on + strandat 740.341 kb on + strandat 740.349 kb on + strandat 740.349 kb on - strandat 740.349 kb on - strandat 740.389 kb on + strandat 740.389 kb on + strandat 740.389 kb on + strandat 740.389 kb on + strandat 740.389 kb on + strandat 740.397 kb on - strandat 740.402 kb on - strandat 740.435 kb on + strandat 740.443 kb on - strandat 740.443 kb on - strandat 740.506 kb on + strandat 740.514 kb on + strandat 740.567 kb on + strand, within PGA1_c07200at 740.638 kb on + strand, within PGA1_c07200at 740.724 kb on + strand, within PGA1_c07200at 740.726 kb on + strand, within PGA1_c07200at 740.732 kb on - strand, within PGA1_c07200at 740.739 kb on + strand, within PGA1_c07200at 740.773 kb on + strand, within PGA1_c07200at 740.810 kb on + strand, within PGA1_c07200at 740.810 kb on + strand, within PGA1_c07200at 740.818 kb on - strand, within PGA1_c07200at 740.829 kb on - strand, within PGA1_c07200at 740.894 kb on - strand, within PGA1_c07200at 740.912 kb on + strand, within PGA1_c07200at 741.030 kb on + strand, within PGA1_c07200at 741.038 kb on - strand, within PGA1_c07200at 741.089 kb on - strand, within PGA1_c07200at 741.089 kb on - strand, within PGA1_c07200at 741.118 kb on - strand, within PGA1_c07200at 741.124 kb on + strand, within PGA1_c07200at 741.132 kb on + strand, within PGA1_c07200at 741.132 kb on + strand, within PGA1_c07200at 741.132 kb on + strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.149 kb on + strand, within PGA1_c07200at 741.180 kb on + strand, within PGA1_c07200at 741.180 kb on + strand, within PGA1_c07200at 741.180 kb on + strand, within PGA1_c07200at 741.258 kb on - strand, within PGA1_c07200at 741.269 kb on - strand, within PGA1_c07200at 741.297 kb on + strand, within PGA1_c07200at 741.297 kb on + strand, within PGA1_c07200at 741.305 kb on - strand, within PGA1_c07200at 741.315 kb on - strand, within PGA1_c07200

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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738,324 + PGA1_c07180 0.25 +0.4
738,324 + PGA1_c07180 0.25 +0.9
738,324 + PGA1_c07180 0.25 +0.6
738,324 + PGA1_c07180 0.25 -1.0
738,332 - PGA1_c07180 0.26 -1.0
738,332 - PGA1_c07180 0.26 +0.0
738,332 - PGA1_c07180 0.26 +1.6
738,332 - PGA1_c07180 0.26 -0.8
738,332 - PGA1_c07180 0.26 +0.5
738,332 - PGA1_c07180 0.26 +0.8
738,332 - PGA1_c07180 0.26 -0.7
738,332 - PGA1_c07180 0.26 +0.9
738,334 + PGA1_c07180 0.26 +0.1
738,336 + PGA1_c07180 0.26 -0.5
738,355 + PGA1_c07180 0.28 -0.7
738,363 + PGA1_c07180 0.29 +1.0
738,437 + PGA1_c07180 0.37 +0.0
738,466 + PGA1_c07180 0.40 +0.2
738,469 - PGA1_c07180 0.40 -0.7
738,491 + PGA1_c07180 0.42 -0.3
738,491 + PGA1_c07180 0.42 -0.0
738,509 + PGA1_c07180 0.44 -0.8
738,517 - PGA1_c07180 0.45 +0.5
738,517 - PGA1_c07180 0.45 +0.7
738,559 + PGA1_c07180 0.49 +1.2
738,567 - PGA1_c07180 0.50 -0.2
738,594 - PGA1_c07180 0.53 +0.4
738,632 + PGA1_c07180 0.57 +0.3
738,633 - PGA1_c07180 0.57 -0.0
738,633 - PGA1_c07180 0.57 -1.0
738,656 + PGA1_c07180 0.59 +0.1
738,690 + PGA1_c07180 0.63 +1.4
738,707 + PGA1_c07180 0.65 +0.5
738,715 - PGA1_c07180 0.65 -0.2
738,750 + PGA1_c07180 0.69 +0.8
738,766 + PGA1_c07180 0.71 -0.2
738,786 + PGA1_c07180 0.73 +0.6
738,794 - PGA1_c07180 0.74 +0.3
738,856 + PGA1_c07180 0.80 -1.2
738,861 + PGA1_c07180 0.81 -0.3
738,861 + PGA1_c07180 0.81 -0.8
738,863 + PGA1_c07180 0.81 -0.1
738,928 + PGA1_c07180 0.87 -0.5
738,976 - +1.1
738,981 - -0.2
738,994 + -0.1
738,994 + -0.0
739,002 - -0.7
739,025 - -0.0
739,151 + -1.1
739,156 + -0.9
739,159 - +0.1
739,159 - -0.7
739,159 - +0.3
739,159 - -2.9
739,159 - -2.1
739,161 + +0.1
739,161 + +0.8
739,188 + -1.4
739,199 + +0.1
739,209 + +0.5
739,248 + +0.5
739,261 - -0.0
739,290 + +0.8
739,290 + -0.3
739,290 + -0.3
739,290 + -0.3
739,290 + +0.9
739,296 + +0.8
739,298 - +0.4
739,298 - -0.0
739,298 - +0.4
739,298 - -0.3
739,304 - +0.8
739,339 + +0.1
739,357 + -1.1
739,365 - -0.3
739,365 - -0.6
739,376 + -0.0
739,378 + -1.0
739,389 + PGA1_c07190 0.11 +0.2
739,444 + PGA1_c07190 0.16 -0.1
739,452 - PGA1_c07190 0.16 -0.0
739,466 - PGA1_c07190 0.18 -0.4
739,487 - PGA1_c07190 0.20 -0.2
739,493 + PGA1_c07190 0.20 -0.2
739,501 + PGA1_c07190 0.21 +0.1
739,501 + PGA1_c07190 0.21 +0.4
739,501 + PGA1_c07190 0.21 +1.0
739,501 + PGA1_c07190 0.21 +0.3
739,501 - PGA1_c07190 0.21 +0.5
739,509 - PGA1_c07190 0.22 +1.4
739,509 - PGA1_c07190 0.22 -2.0
739,509 - PGA1_c07190 0.22 +0.6
739,509 - PGA1_c07190 0.22 +1.6
739,511 - PGA1_c07190 0.22 +1.6
739,526 + PGA1_c07190 0.23 -0.0
739,569 + PGA1_c07190 0.27 +0.8
739,577 - PGA1_c07190 0.28 +0.2
739,590 - PGA1_c07190 0.29 -0.7
739,605 + PGA1_c07190 0.31 +0.6
739,613 - PGA1_c07190 0.31 -0.2
739,613 - PGA1_c07190 0.31 -0.4
739,695 + PGA1_c07190 0.39 +0.3
739,695 + PGA1_c07190 0.39 +0.7
739,695 + PGA1_c07190 0.39 +0.5
739,695 + PGA1_c07190 0.39 +0.2
739,695 + PGA1_c07190 0.39 -0.3
739,695 + PGA1_c07190 0.39 -0.0
739,695 + PGA1_c07190 0.39 -0.6
739,703 - PGA1_c07190 0.40 -0.0
739,752 + PGA1_c07190 0.44 -0.0
739,912 + PGA1_c07190 0.59 -0.2
739,941 + PGA1_c07190 0.62 +1.6
739,943 + PGA1_c07190 0.62 +1.2
739,945 - PGA1_c07190 0.62 -1.4
739,957 - PGA1_c07190 0.64 -0.8
739,985 + PGA1_c07190 0.66 -1.1
739,985 + PGA1_c07190 0.66 +1.8
739,985 + PGA1_c07190 0.66 -0.2
739,993 - PGA1_c07190 0.67 +2.4
740,045 - PGA1_c07190 0.72 +0.4
740,048 + PGA1_c07190 0.72 +0.6
740,056 - PGA1_c07190 0.73 +0.8
740,056 - PGA1_c07190 0.73 -0.8
740,058 + PGA1_c07190 0.73 -0.0
740,066 - PGA1_c07190 0.74 +0.4
740,216 + PGA1_c07190 0.88 +0.3
740,247 + -1.1
740,247 + +0.0
740,341 + -1.6
740,341 + -1.0
740,349 + +0.2
740,349 - +0.3
740,349 - +0.4
740,389 + +1.6
740,389 + +0.1
740,389 + -0.4
740,389 + +1.9
740,389 + -1.6
740,397 - -1.6
740,402 - +2.6
740,435 + -0.7
740,443 - +0.4
740,443 - +0.2
740,506 + -0.9
740,514 + -0.0
740,567 + PGA1_c07200 0.14 -0.4
740,638 + PGA1_c07200 0.20 -0.6
740,724 + PGA1_c07200 0.27 +1.7
740,726 + PGA1_c07200 0.27 -0.7
740,732 - PGA1_c07200 0.28 -0.0
740,739 + PGA1_c07200 0.28 -0.6
740,773 + PGA1_c07200 0.31 +0.2
740,810 + PGA1_c07200 0.34 +1.0
740,810 + PGA1_c07200 0.34 -0.3
740,818 - PGA1_c07200 0.35 -0.1
740,829 - PGA1_c07200 0.36 +0.1
740,894 - PGA1_c07200 0.41 +0.7
740,912 + PGA1_c07200 0.43 -1.0
741,030 + PGA1_c07200 0.53 -0.7
741,038 - PGA1_c07200 0.53 -0.8
741,089 - PGA1_c07200 0.58 -0.2
741,089 - PGA1_c07200 0.58 +1.9
741,118 - PGA1_c07200 0.60 -0.1
741,124 + PGA1_c07200 0.61 +0.2
741,132 + PGA1_c07200 0.61 +0.1
741,132 + PGA1_c07200 0.61 +0.7
741,132 + PGA1_c07200 0.61 -0.0
741,140 - PGA1_c07200 0.62 -0.2
741,140 - PGA1_c07200 0.62 +0.5
741,140 - PGA1_c07200 0.62 -0.7
741,140 - PGA1_c07200 0.62 -0.2
741,140 - PGA1_c07200 0.62 +0.2
741,140 - PGA1_c07200 0.62 +0.3
741,140 - PGA1_c07200 0.62 -0.1
741,140 - PGA1_c07200 0.62 -0.3
741,140 - PGA1_c07200 0.62 +0.1
741,140 - PGA1_c07200 0.62 -0.2
741,149 + PGA1_c07200 0.63 +0.0
741,180 + PGA1_c07200 0.65 +0.4
741,180 + PGA1_c07200 0.65 -0.0
741,180 + PGA1_c07200 0.65 +0.1
741,258 - PGA1_c07200 0.72 -0.0
741,269 - PGA1_c07200 0.73 +0.7
741,297 + PGA1_c07200 0.75 -0.2
741,297 + PGA1_c07200 0.75 -0.2
741,305 - PGA1_c07200 0.76 +0.4
741,315 - PGA1_c07200 0.77 +0.2

Or see this region's nucleotide sequence