Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04430

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04420 and PGA1_c04430 overlap by 4 nucleotidesPGA1_c04430 and PGA1_c04440 are separated by 12 nucleotides PGA1_c04420: PGA1_c04420 - putative glutathione transport system permease protein GsiD, at 429,410 to 430,564 _c04420 PGA1_c04430: PGA1_c04430 - putative peptide permease protein, at 430,561 to 431,589 _c04430 PGA1_c04440: PGA1_c04440 - putative extracellular solute-binding protein, at 431,602 to 433,545 _c04440 Position (kb) 430 431 432Strain fitness (log2 ratio) -3 -2 -1 0 1at 429.564 kb on - strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.583 kb on + strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.591 kb on - strand, within PGA1_c04420at 429.609 kb on + strand, within PGA1_c04420at 429.727 kb on - strand, within PGA1_c04420at 429.734 kb on + strand, within PGA1_c04420at 429.742 kb on - strand, within PGA1_c04420at 429.781 kb on + strand, within PGA1_c04420at 429.781 kb on + strand, within PGA1_c04420at 429.786 kb on + strand, within PGA1_c04420at 429.789 kb on - strand, within PGA1_c04420at 429.851 kb on + strand, within PGA1_c04420at 429.897 kb on + strand, within PGA1_c04420at 429.932 kb on - strand, within PGA1_c04420at 430.015 kb on + strand, within PGA1_c04420at 430.018 kb on - strand, within PGA1_c04420at 430.018 kb on - strand, within PGA1_c04420at 430.018 kb on - strand, within PGA1_c04420at 430.021 kb on + strand, within PGA1_c04420at 430.055 kb on + strand, within PGA1_c04420at 430.070 kb on + strand, within PGA1_c04420at 430.091 kb on + strand, within PGA1_c04420at 430.099 kb on + strand, within PGA1_c04420at 430.121 kb on + strand, within PGA1_c04420at 430.126 kb on + strand, within PGA1_c04420at 430.134 kb on - strand, within PGA1_c04420at 430.246 kb on + strand, within PGA1_c04420at 430.254 kb on - strand, within PGA1_c04420at 430.254 kb on - strand, within PGA1_c04420at 430.254 kb on - strand, within PGA1_c04420at 430.254 kb on - strand, within PGA1_c04420at 430.265 kb on + strand, within PGA1_c04420at 430.273 kb on - strand, within PGA1_c04420at 430.288 kb on - strand, within PGA1_c04420at 430.310 kb on + strand, within PGA1_c04420at 430.315 kb on - strand, within PGA1_c04420at 430.387 kb on + strand, within PGA1_c04420at 430.411 kb on + strand, within PGA1_c04420at 430.411 kb on + strand, within PGA1_c04420at 430.411 kb on + strand, within PGA1_c04420at 430.418 kb on + strand, within PGA1_c04420at 430.419 kb on + strand, within PGA1_c04420at 430.429 kb on + strand, within PGA1_c04420at 430.429 kb on + strand, within PGA1_c04420at 430.454 kb on + strandat 430.475 kb on + strandat 430.483 kb on - strandat 430.490 kb on - strandat 430.512 kb on - strandat 430.575 kb on + strandat 430.575 kb on + strandat 430.575 kb on + strandat 430.575 kb on + strandat 430.583 kb on - strandat 430.583 kb on - strandat 430.583 kb on - strandat 430.583 kb on - strandat 430.628 kb on + strandat 430.636 kb on - strandat 430.701 kb on - strand, within PGA1_c04430at 430.713 kb on - strand, within PGA1_c04430at 430.718 kb on - strand, within PGA1_c04430at 430.737 kb on + strand, within PGA1_c04430at 430.747 kb on + strand, within PGA1_c04430at 430.747 kb on + strand, within PGA1_c04430at 430.747 kb on + strand, within PGA1_c04430at 430.750 kb on - strand, within PGA1_c04430at 430.755 kb on - strand, within PGA1_c04430at 430.755 kb on - strand, within PGA1_c04430at 430.755 kb on - strand, within PGA1_c04430at 430.755 kb on - strand, within PGA1_c04430at 430.755 kb on - strand, within PGA1_c04430at 430.847 kb on - strand, within PGA1_c04430at 430.941 kb on + strand, within PGA1_c04430at 430.963 kb on + strand, within PGA1_c04430at 430.963 kb on + strand, within PGA1_c04430at 431.016 kb on - strand, within PGA1_c04430at 431.029 kb on + strand, within PGA1_c04430at 431.037 kb on - strand, within PGA1_c04430at 431.088 kb on + strand, within PGA1_c04430at 431.096 kb on - strand, within PGA1_c04430at 431.120 kb on + strand, within PGA1_c04430at 431.121 kb on + strand, within PGA1_c04430at 431.121 kb on + strand, within PGA1_c04430at 431.121 kb on + strand, within PGA1_c04430at 431.128 kb on - strand, within PGA1_c04430at 431.129 kb on - strand, within PGA1_c04430at 431.129 kb on - strand, within PGA1_c04430at 431.139 kb on - strand, within PGA1_c04430at 431.140 kb on + strand, within PGA1_c04430at 431.156 kb on + strand, within PGA1_c04430at 431.164 kb on - strand, within PGA1_c04430at 431.202 kb on + strand, within PGA1_c04430at 431.239 kb on - strand, within PGA1_c04430at 431.244 kb on - strand, within PGA1_c04430at 431.244 kb on - strand, within PGA1_c04430at 431.244 kb on - strand, within PGA1_c04430at 431.282 kb on + strand, within PGA1_c04430at 431.290 kb on - strand, within PGA1_c04430at 431.290 kb on - strand, within PGA1_c04430at 431.314 kb on + strand, within PGA1_c04430at 431.317 kb on - strand, within PGA1_c04430at 431.322 kb on - strand, within PGA1_c04430at 431.337 kb on + strand, within PGA1_c04430at 431.348 kb on + strand, within PGA1_c04430at 431.355 kb on + strand, within PGA1_c04430at 431.356 kb on - strand, within PGA1_c04430at 431.356 kb on - strand, within PGA1_c04430at 431.356 kb on - strand, within PGA1_c04430at 431.358 kb on - strand, within PGA1_c04430at 431.360 kb on + strand, within PGA1_c04430at 431.385 kb on - strand, within PGA1_c04430at 431.440 kb on + strand, within PGA1_c04430at 431.445 kb on + strand, within PGA1_c04430at 431.448 kb on - strand, within PGA1_c04430at 431.448 kb on - strand, within PGA1_c04430at 431.453 kb on - strand, within PGA1_c04430at 431.453 kb on - strand, within PGA1_c04430at 431.453 kb on - strand, within PGA1_c04430at 431.453 kb on - strand, within PGA1_c04430at 431.453 kb on - strand, within PGA1_c04430at 431.453 kb on - strand, within PGA1_c04430at 431.453 kb on - strand, within PGA1_c04430at 431.547 kb on + strandat 431.552 kb on + strandat 431.578 kb on - strandat 431.600 kb on + strandat 431.600 kb on + strandat 431.605 kb on + strandat 431.631 kb on + strandat 431.711 kb on - strandat 431.746 kb on + strandat 431.748 kb on + strandat 431.753 kb on + strandat 431.753 kb on + strandat 431.753 kb on + strandat 431.753 kb on + strandat 431.758 kb on + strandat 431.758 kb on + strandat 431.758 kb on + strandat 431.761 kb on - strandat 431.766 kb on - strandat 431.816 kb on + strand, within PGA1_c04440at 431.823 kb on - strand, within PGA1_c04440at 431.824 kb on - strand, within PGA1_c04440at 431.864 kb on + strand, within PGA1_c04440at 431.864 kb on + strand, within PGA1_c04440at 431.872 kb on + strand, within PGA1_c04440at 431.872 kb on + strand, within PGA1_c04440at 431.872 kb on - strand, within PGA1_c04440at 431.894 kb on + strand, within PGA1_c04440at 431.938 kb on + strand, within PGA1_c04440at 431.951 kb on + strand, within PGA1_c04440at 431.986 kb on - strand, within PGA1_c04440at 432.036 kb on + strand, within PGA1_c04440at 432.081 kb on + strand, within PGA1_c04440at 432.145 kb on + strand, within PGA1_c04440at 432.227 kb on - strand, within PGA1_c04440at 432.233 kb on - strand, within PGA1_c04440at 432.255 kb on + strand, within PGA1_c04440at 432.268 kb on - strand, within PGA1_c04440at 432.286 kb on - strand, within PGA1_c04440at 432.335 kb on + strand, within PGA1_c04440at 432.335 kb on + strand, within PGA1_c04440at 432.364 kb on + strand, within PGA1_c04440at 432.372 kb on - strand, within PGA1_c04440at 432.372 kb on - strand, within PGA1_c04440at 432.387 kb on - strand, within PGA1_c04440at 432.464 kb on - strand, within PGA1_c04440at 432.501 kb on + strand, within PGA1_c04440at 432.514 kb on - strand, within PGA1_c04440at 432.514 kb on - strand, within PGA1_c04440at 432.551 kb on - strand, within PGA1_c04440at 432.551 kb on - strand, within PGA1_c04440at 432.561 kb on + strand, within PGA1_c04440at 432.569 kb on - strand, within PGA1_c04440

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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429,564 - PGA1_c04420 0.13 -1.1
429,583 + PGA1_c04420 0.15 -0.6
429,583 + PGA1_c04420 0.15 -1.4
429,583 + PGA1_c04420 0.15 -0.0
429,583 + PGA1_c04420 0.15 -0.6
429,583 + PGA1_c04420 0.15 -0.9
429,583 + PGA1_c04420 0.15 -1.0
429,583 + PGA1_c04420 0.15 -1.7
429,583 + PGA1_c04420 0.15 +0.4
429,583 + PGA1_c04420 0.15 -1.2
429,583 + PGA1_c04420 0.15 -2.3
429,591 - PGA1_c04420 0.16 -1.7
429,591 - PGA1_c04420 0.16 -0.3
429,591 - PGA1_c04420 0.16 -1.7
429,591 - PGA1_c04420 0.16 -1.0
429,591 - PGA1_c04420 0.16 -1.7
429,591 - PGA1_c04420 0.16 -0.9
429,591 - PGA1_c04420 0.16 -2.3
429,591 - PGA1_c04420 0.16 -2.4
429,591 - PGA1_c04420 0.16 -1.4
429,591 - PGA1_c04420 0.16 -0.2
429,591 - PGA1_c04420 0.16 -2.7
429,609 + PGA1_c04420 0.17 -1.4
429,727 - PGA1_c04420 0.27 -1.1
429,734 + PGA1_c04420 0.28 -2.3
429,742 - PGA1_c04420 0.29 -0.3
429,781 + PGA1_c04420 0.32 +0.1
429,781 + PGA1_c04420 0.32 -0.3
429,786 + PGA1_c04420 0.33 -1.1
429,789 - PGA1_c04420 0.33 -2.4
429,851 + PGA1_c04420 0.38 -0.5
429,897 + PGA1_c04420 0.42 -2.9
429,932 - PGA1_c04420 0.45 -1.7
430,015 + PGA1_c04420 0.52 -1.0
430,018 - PGA1_c04420 0.53 -0.1
430,018 - PGA1_c04420 0.53 -1.8
430,018 - PGA1_c04420 0.53 -2.9
430,021 + PGA1_c04420 0.53 -0.7
430,055 + PGA1_c04420 0.56 -1.6
430,070 + PGA1_c04420 0.57 -1.5
430,091 + PGA1_c04420 0.59 -0.6
430,099 + PGA1_c04420 0.60 -0.7
430,121 + PGA1_c04420 0.62 -1.1
430,126 + PGA1_c04420 0.62 -2.2
430,134 - PGA1_c04420 0.63 -1.3
430,246 + PGA1_c04420 0.72 -1.1
430,254 - PGA1_c04420 0.73 -1.9
430,254 - PGA1_c04420 0.73 -0.3
430,254 - PGA1_c04420 0.73 -1.4
430,254 - PGA1_c04420 0.73 -1.1
430,265 + PGA1_c04420 0.74 -0.9
430,273 - PGA1_c04420 0.75 -0.3
430,288 - PGA1_c04420 0.76 -1.4
430,310 + PGA1_c04420 0.78 -1.2
430,315 - PGA1_c04420 0.78 -0.5
430,387 + PGA1_c04420 0.85 -0.6
430,411 + PGA1_c04420 0.87 -3.1
430,411 + PGA1_c04420 0.87 -1.7
430,411 + PGA1_c04420 0.87 -1.3
430,418 + PGA1_c04420 0.87 -2.0
430,419 + PGA1_c04420 0.87 -1.9
430,429 + PGA1_c04420 0.88 -2.1
430,429 + PGA1_c04420 0.88 -0.2
430,454 + -0.8
430,475 + -0.6
430,483 - -1.3
430,490 - -2.0
430,512 - -0.4
430,575 + -0.4
430,575 + -0.6
430,575 + +0.4
430,575 + -2.6
430,583 - -0.4
430,583 - -0.2
430,583 - -0.4
430,583 - -0.8
430,628 + -0.3
430,636 - -1.9
430,701 - PGA1_c04430 0.14 -3.0
430,713 - PGA1_c04430 0.15 -0.7
430,718 - PGA1_c04430 0.15 -1.9
430,737 + PGA1_c04430 0.17 -0.7
430,747 + PGA1_c04430 0.18 -0.9
430,747 + PGA1_c04430 0.18 -1.9
430,747 + PGA1_c04430 0.18 -0.6
430,750 - PGA1_c04430 0.18 -0.9
430,755 - PGA1_c04430 0.19 -0.4
430,755 - PGA1_c04430 0.19 -1.1
430,755 - PGA1_c04430 0.19 -2.5
430,755 - PGA1_c04430 0.19 +0.4
430,755 - PGA1_c04430 0.19 -1.4
430,847 - PGA1_c04430 0.28 -0.9
430,941 + PGA1_c04430 0.37 -1.5
430,963 + PGA1_c04430 0.39 -1.9
430,963 + PGA1_c04430 0.39 -2.8
431,016 - PGA1_c04430 0.44 -1.1
431,029 + PGA1_c04430 0.45 -0.9
431,037 - PGA1_c04430 0.46 -2.6
431,088 + PGA1_c04430 0.51 +0.9
431,096 - PGA1_c04430 0.52 +0.1
431,120 + PGA1_c04430 0.54 -1.9
431,121 + PGA1_c04430 0.54 -1.1
431,121 + PGA1_c04430 0.54 -0.9
431,121 + PGA1_c04430 0.54 -0.9
431,128 - PGA1_c04430 0.55 -1.0
431,129 - PGA1_c04430 0.55 -1.5
431,129 - PGA1_c04430 0.55 -2.4
431,139 - PGA1_c04430 0.56 -0.8
431,140 + PGA1_c04430 0.56 -1.6
431,156 + PGA1_c04430 0.58 -1.2
431,164 - PGA1_c04430 0.59 -1.0
431,202 + PGA1_c04430 0.62 -0.2
431,239 - PGA1_c04430 0.66 -0.9
431,244 - PGA1_c04430 0.66 -0.9
431,244 - PGA1_c04430 0.66 -1.6
431,244 - PGA1_c04430 0.66 -1.1
431,282 + PGA1_c04430 0.70 -0.2
431,290 - PGA1_c04430 0.71 +0.1
431,290 - PGA1_c04430 0.71 -2.9
431,314 + PGA1_c04430 0.73 -1.7
431,317 - PGA1_c04430 0.73 -1.2
431,322 - PGA1_c04430 0.74 -1.6
431,337 + PGA1_c04430 0.75 -0.6
431,348 + PGA1_c04430 0.76 -1.0
431,355 + PGA1_c04430 0.77 -2.7
431,356 - PGA1_c04430 0.77 -1.3
431,356 - PGA1_c04430 0.77 -0.4
431,356 - PGA1_c04430 0.77 -0.7
431,358 - PGA1_c04430 0.77 -2.3
431,360 + PGA1_c04430 0.78 -1.7
431,385 - PGA1_c04430 0.80 -1.1
431,440 + PGA1_c04430 0.85 -0.1
431,445 + PGA1_c04430 0.86 +0.9
431,448 - PGA1_c04430 0.86 -3.0
431,448 - PGA1_c04430 0.86 -0.4
431,453 - PGA1_c04430 0.87 -1.3
431,453 - PGA1_c04430 0.87 -0.9
431,453 - PGA1_c04430 0.87 -2.3
431,453 - PGA1_c04430 0.87 -1.7
431,453 - PGA1_c04430 0.87 -3.1
431,453 - PGA1_c04430 0.87 -1.9
431,453 - PGA1_c04430 0.87 -0.8
431,547 + -1.2
431,552 + -0.9
431,578 - -3.3
431,600 + -0.7
431,600 + -0.6
431,605 + -1.7
431,631 + -1.6
431,711 - -0.9
431,746 + -0.7
431,748 + -0.0
431,753 + -0.6
431,753 + -0.8
431,753 + -2.0
431,753 + -1.4
431,758 + +0.4
431,758 + -2.1
431,758 + -0.9
431,761 - -1.6
431,766 - -1.6
431,816 + PGA1_c04440 0.11 -1.9
431,823 - PGA1_c04440 0.11 -2.3
431,824 - PGA1_c04440 0.11 -0.8
431,864 + PGA1_c04440 0.13 -1.3
431,864 + PGA1_c04440 0.13 -2.4
431,872 + PGA1_c04440 0.14 -1.4
431,872 + PGA1_c04440 0.14 -1.0
431,872 - PGA1_c04440 0.14 -1.9
431,894 + PGA1_c04440 0.15 -1.4
431,938 + PGA1_c04440 0.17 -0.0
431,951 + PGA1_c04440 0.18 -2.1
431,986 - PGA1_c04440 0.20 -1.7
432,036 + PGA1_c04440 0.22 -1.4
432,081 + PGA1_c04440 0.25 -0.1
432,145 + PGA1_c04440 0.28 +0.1
432,227 - PGA1_c04440 0.32 -0.6
432,233 - PGA1_c04440 0.32 -1.7
432,255 + PGA1_c04440 0.34 +0.1
432,268 - PGA1_c04440 0.34 -2.1
432,286 - PGA1_c04440 0.35 -1.4
432,335 + PGA1_c04440 0.38 -2.2
432,335 + PGA1_c04440 0.38 -1.9
432,364 + PGA1_c04440 0.39 -1.6
432,372 - PGA1_c04440 0.40 -1.6
432,372 - PGA1_c04440 0.40 -2.4
432,387 - PGA1_c04440 0.40 -1.5
432,464 - PGA1_c04440 0.44 -1.1
432,501 + PGA1_c04440 0.46 -0.8
432,514 - PGA1_c04440 0.47 -1.4
432,514 - PGA1_c04440 0.47 -0.3
432,551 - PGA1_c04440 0.49 -0.6
432,551 - PGA1_c04440 0.49 -1.1
432,561 + PGA1_c04440 0.49 -0.5
432,569 - PGA1_c04440 0.50 -1.0

Or see this region's nucleotide sequence