Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03960 and PGA1_c03970 are separated by 198 nucleotides PGA1_c03970 and PGA1_c03980 are separated by 129 nucleotides PGA1_c03980 and PGA1_c03990 are separated by 64 nucleotides
PGA1_c03960: PGA1_c03960 - ribose import ATP-binding protein RbsA, at 382,758 to 384,287
_c03960
PGA1_c03970: PGA1_c03970 - putative lipoprotein, at 384,486 to 385,481
_c03970
PGA1_c03980: PGA1_c03980 - putative acetyltransferase, at 385,611 to 386,027
_c03980
PGA1_c03990: PGA1_c03990 - putative peptidase M22, at 386,092 to 386,688
_c03990
Position (kb) 384
385
386 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 383.494 kb on + strand, within PGA1_c03960 at 383.502 kb on - strand, within PGA1_c03960 at 383.556 kb on + strand, within PGA1_c03960 at 383.564 kb on + strand, within PGA1_c03960 at 383.572 kb on - strand, within PGA1_c03960 at 383.631 kb on + strand, within PGA1_c03960 at 383.639 kb on - strand, within PGA1_c03960 at 383.687 kb on + strand, within PGA1_c03960 at 383.695 kb on - strand, within PGA1_c03960 at 383.695 kb on - strand, within PGA1_c03960 at 383.695 kb on - strand, within PGA1_c03960 at 383.697 kb on + strand, within PGA1_c03960 at 383.730 kb on - strand, within PGA1_c03960 at 383.733 kb on + strand, within PGA1_c03960 at 383.748 kb on - strand, within PGA1_c03960 at 383.756 kb on - strand, within PGA1_c03960 at 383.779 kb on + strand, within PGA1_c03960 at 383.814 kb on + strand, within PGA1_c03960 at 383.943 kb on - strand, within PGA1_c03960 at 383.958 kb on - strand, within PGA1_c03960 at 384.016 kb on + strand, within PGA1_c03960 at 384.024 kb on - strand, within PGA1_c03960 at 384.024 kb on - strand, within PGA1_c03960 at 384.025 kb on - strand, within PGA1_c03960 at 384.118 kb on + strand, within PGA1_c03960 at 384.126 kb on - strand, within PGA1_c03960 at 384.130 kb on + strand, within PGA1_c03960 at 384.139 kb on + strand at 384.157 kb on - strand at 384.200 kb on + strand at 384.208 kb on - strand at 384.222 kb on - strand at 384.228 kb on + strand at 384.228 kb on + strand at 384.229 kb on + strand at 384.239 kb on + strand at 384.239 kb on + strand at 384.239 kb on + strand at 384.239 kb on + strand at 384.239 kb on + strand at 384.239 kb on + strand at 384.242 kb on - strand at 384.247 kb on - strand at 384.293 kb on - strand at 384.303 kb on - strand at 384.304 kb on - strand at 384.325 kb on + strand at 384.328 kb on - strand at 384.472 kb on + strand at 384.519 kb on + strand at 384.525 kb on + strand at 384.533 kb on - strand at 384.572 kb on - strand at 384.640 kb on + strand, within PGA1_c03970 at 384.648 kb on - strand, within PGA1_c03970 at 384.648 kb on - strand, within PGA1_c03970 at 384.659 kb on - strand, within PGA1_c03970 at 384.668 kb on - strand, within PGA1_c03970 at 384.677 kb on + strand, within PGA1_c03970 at 384.685 kb on - strand, within PGA1_c03970 at 384.698 kb on + strand, within PGA1_c03970 at 384.736 kb on + strand, within PGA1_c03970 at 384.857 kb on + strand, within PGA1_c03970 at 384.890 kb on + strand, within PGA1_c03970 at 384.891 kb on - strand, within PGA1_c03970 at 384.897 kb on + strand, within PGA1_c03970 at 384.898 kb on - strand, within PGA1_c03970 at 384.898 kb on - strand, within PGA1_c03970 at 384.898 kb on - strand, within PGA1_c03970 at 384.955 kb on + strand, within PGA1_c03970 at 385.035 kb on + strand, within PGA1_c03970 at 385.048 kb on - strand, within PGA1_c03970 at 385.089 kb on + strand, within PGA1_c03970 at 385.097 kb on - strand, within PGA1_c03970 at 385.133 kb on - strand, within PGA1_c03970 at 385.133 kb on - strand, within PGA1_c03970 at 385.278 kb on - strand, within PGA1_c03970 at 385.293 kb on - strand, within PGA1_c03970 at 385.325 kb on + strand, within PGA1_c03970 at 385.330 kb on + strand, within PGA1_c03970 at 385.330 kb on + strand, within PGA1_c03970 at 385.330 kb on + strand, within PGA1_c03970 at 385.330 kb on + strand, within PGA1_c03970 at 385.338 kb on - strand, within PGA1_c03970 at 385.338 kb on - strand, within PGA1_c03970 at 385.338 kb on - strand, within PGA1_c03970 at 385.355 kb on - strand, within PGA1_c03970 at 385.391 kb on + strand at 385.461 kb on - strand at 385.476 kb on + strand at 385.476 kb on + strand at 385.484 kb on - strand at 385.518 kb on + strand at 385.525 kb on - strand at 385.534 kb on - strand at 385.535 kb on - strand at 385.535 kb on - strand at 385.573 kb on + strand at 385.574 kb on - strand at 385.591 kb on - strand at 385.591 kb on - strand at 385.621 kb on - strand at 385.621 kb on - strand at 385.621 kb on - strand at 385.637 kb on + strand at 385.645 kb on + strand at 385.645 kb on + strand at 385.645 kb on + strand at 385.645 kb on + strand at 385.647 kb on + strand at 385.647 kb on + strand at 385.647 kb on + strand at 385.647 kb on + strand at 385.647 kb on + strand at 385.653 kb on - strand, within PGA1_c03980 at 385.653 kb on - strand, within PGA1_c03980 at 385.655 kb on - strand, within PGA1_c03980 at 385.655 kb on - strand, within PGA1_c03980 at 385.659 kb on + strand, within PGA1_c03980 at 385.667 kb on - strand, within PGA1_c03980 at 385.685 kb on + strand, within PGA1_c03980 at 385.693 kb on - strand, within PGA1_c03980 at 385.726 kb on + strand, within PGA1_c03980 at 385.836 kb on - strand, within PGA1_c03980 at 385.836 kb on - strand, within PGA1_c03980 at 385.838 kb on + strand, within PGA1_c03980 at 385.852 kb on + strand, within PGA1_c03980 at 385.858 kb on + strand, within PGA1_c03980 at 385.872 kb on + strand, within PGA1_c03980 at 385.934 kb on + strand, within PGA1_c03980 at 385.961 kb on - strand, within PGA1_c03980 at 386.021 kb on + strand at 386.024 kb on - strand at 386.071 kb on + strand at 386.073 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 383,494 + PGA1_c03960 0.48 -1.7 383,502 - PGA1_c03960 0.49 +0.2 383,556 + PGA1_c03960 0.52 -1.6 383,564 + PGA1_c03960 0.53 -0.1 383,572 - PGA1_c03960 0.53 -1.3 383,631 + PGA1_c03960 0.57 -1.8 383,639 - PGA1_c03960 0.58 +1.0 383,687 + PGA1_c03960 0.61 -1.0 383,695 - PGA1_c03960 0.61 -1.1 383,695 - PGA1_c03960 0.61 -1.0 383,695 - PGA1_c03960 0.61 -1.4 383,697 + PGA1_c03960 0.61 -1.3 383,730 - PGA1_c03960 0.64 -3.1 383,733 + PGA1_c03960 0.64 +0.4 383,748 - PGA1_c03960 0.65 -2.1 383,756 - PGA1_c03960 0.65 +0.7 383,779 + PGA1_c03960 0.67 -0.1 383,814 + PGA1_c03960 0.69 -0.8 383,943 - PGA1_c03960 0.77 +0.5 383,958 - PGA1_c03960 0.78 -0.8 384,016 + PGA1_c03960 0.82 -1.1 384,024 - PGA1_c03960 0.83 -0.7 384,024 - PGA1_c03960 0.83 -0.6 384,025 - PGA1_c03960 0.83 -0.8 384,118 + PGA1_c03960 0.89 -1.3 384,126 - PGA1_c03960 0.89 -2.2 384,130 + PGA1_c03960 0.90 -1.9 384,139 + -1.3 384,157 - -0.4 384,200 + +0.2 384,208 - -0.7 384,222 - -0.8 384,228 + -0.5 384,228 + -1.7 384,229 + -0.7 384,239 + -1.1 384,239 + -0.3 384,239 + -0.9 384,239 + -0.7 384,239 + -1.4 384,239 + +0.7 384,242 - -0.6 384,247 - -1.4 384,293 - -1.3 384,303 - +0.3 384,304 - +0.3 384,325 + -1.6 384,328 - +0.3 384,472 + -1.6 384,519 + +0.6 384,525 + +0.4 384,533 - -2.0 384,572 - +1.3 384,640 + PGA1_c03970 0.15 -0.1 384,648 - PGA1_c03970 0.16 -0.3 384,648 - PGA1_c03970 0.16 -0.5 384,659 - PGA1_c03970 0.17 -0.7 384,668 - PGA1_c03970 0.18 -0.1 384,677 + PGA1_c03970 0.19 -1.0 384,685 - PGA1_c03970 0.20 -1.3 384,698 + PGA1_c03970 0.21 -1.4 384,736 + PGA1_c03970 0.25 -1.3 384,857 + PGA1_c03970 0.37 +0.2 384,890 + PGA1_c03970 0.41 -1.6 384,891 - PGA1_c03970 0.41 -0.4 384,897 + PGA1_c03970 0.41 -1.4 384,898 - PGA1_c03970 0.41 +0.2 384,898 - PGA1_c03970 0.41 -0.5 384,898 - PGA1_c03970 0.41 -0.2 384,955 + PGA1_c03970 0.47 -0.7 385,035 + PGA1_c03970 0.55 -1.0 385,048 - PGA1_c03970 0.56 +0.1 385,089 + PGA1_c03970 0.61 -1.6 385,097 - PGA1_c03970 0.61 -1.1 385,133 - PGA1_c03970 0.65 +1.1 385,133 - PGA1_c03970 0.65 -1.3 385,278 - PGA1_c03970 0.80 -1.3 385,293 - PGA1_c03970 0.81 -0.3 385,325 + PGA1_c03970 0.84 -0.7 385,330 + PGA1_c03970 0.85 -0.4 385,330 + PGA1_c03970 0.85 +0.9 385,330 + PGA1_c03970 0.85 -1.2 385,330 + PGA1_c03970 0.85 -1.5 385,338 - PGA1_c03970 0.86 +0.2 385,338 - PGA1_c03970 0.86 +0.4 385,338 - PGA1_c03970 0.86 -1.9 385,355 - PGA1_c03970 0.87 -1.2 385,391 + +0.0 385,461 - -0.7 385,476 + -1.4 385,476 + +0.5 385,484 - +0.7 385,518 + +0.2 385,525 - -1.2 385,534 - +0.6 385,535 - -0.8 385,535 - -1.1 385,573 + +0.4 385,574 - -0.8 385,591 - -2.1 385,591 - -0.1 385,621 - -0.2 385,621 - -0.9 385,621 - -0.4 385,637 + +0.9 385,645 + -0.1 385,645 + -1.3 385,645 + +0.3 385,645 + +0.3 385,647 + -1.7 385,647 + -0.7 385,647 + -1.8 385,647 + +0.7 385,647 + -0.8 385,653 - PGA1_c03980 0.10 -0.8 385,653 - PGA1_c03980 0.10 -0.6 385,655 - PGA1_c03980 0.11 -2.5 385,655 - PGA1_c03980 0.11 -1.4 385,659 + PGA1_c03980 0.12 -1.1 385,667 - PGA1_c03980 0.13 -0.2 385,685 + PGA1_c03980 0.18 -0.1 385,693 - PGA1_c03980 0.20 -0.2 385,726 + PGA1_c03980 0.28 -0.4 385,836 - PGA1_c03980 0.54 -0.2 385,836 - PGA1_c03980 0.54 -1.7 385,838 + PGA1_c03980 0.54 +0.3 385,852 + PGA1_c03980 0.58 -0.6 385,858 + PGA1_c03980 0.59 -1.3 385,872 + PGA1_c03980 0.63 -0.3 385,934 + PGA1_c03980 0.77 -0.2 385,961 - PGA1_c03980 0.84 +0.7 386,021 + -1.3 386,024 - -1.2 386,071 + -0.0 386,073 - +1.3
Or see this region's nucleotide sequence