Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_78p00070 and PGA1_78p00080 overlap by 4 nucleotides PGA1_78p00080 and PGA1_78p00090 are separated by 36 nucleotides PGA1_78p00090 and PGA1_78p00100 are separated by 148 nucleotides
PGA1_78p00070: PGA1_78p00070 - 'RNA polymerase sigma-70, ECF subfamily; ECF26 subgroup', at 8,521 to 9,078
_78p00070
PGA1_78p00080: PGA1_78p00080 - Predicted transmembrane transcriptional regulator (anti-sigma factor), at 9,075 to 9,917
_78p00080
PGA1_78p00090: PGA1_78p00090 - putative HTH-type transcriptional regulator, at 9,954 to 10,403
_78p00090
PGA1_78p00100: PGA1_78p00100 - flavohemoprotein Hmp, at 10,552 to 11,742
_78p00100
Position (kb) 9
10
11 Strain fitness (log2 ratio) -2
-1
0
1
2 at 9.072 kb on + strand at 10.252 kb on + strand, within PGA1_78p00090 at 10.542 kb on + strand at 10.547 kb on + strand at 10.749 kb on - strand, within PGA1_78p00100 at 10.893 kb on - strand, within PGA1_78p00100 at 10.934 kb on - strand, within PGA1_78p00100 at 11.230 kb on - strand, within PGA1_78p00100 at 11.250 kb on - strand, within PGA1_78p00100 at 11.287 kb on + strand, within PGA1_78p00100 at 11.295 kb on - strand, within PGA1_78p00100
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 9,072 + -0.3 10,252 + PGA1_78p00090 0.66 +0.1 10,542 + +0.6 10,547 + -0.2 10,749 - PGA1_78p00100 0.17 -0.5 10,893 - PGA1_78p00100 0.29 +0.2 10,934 - PGA1_78p00100 0.32 +0.4 11,230 - PGA1_78p00100 0.57 -2.3 11,250 - PGA1_78p00100 0.59 -1.4 11,287 + PGA1_78p00100 0.62 +1.6 11,295 - PGA1_78p00100 0.62 +1.8
Or see this region's nucleotide sequence