Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c30410

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c30400 and PGA1_c30410 are separated by 103 nucleotidesPGA1_c30410 and PGA1_c30420 are separated by 137 nucleotides PGA1_c30400: PGA1_c30400 - alcohol dehydrogenase AlkJ, at 3,175,427 to 3,177,016 _c30400 PGA1_c30410: PGA1_c30410 - HTH-type transcriptional regulator, AsnC family, at 3,177,120 to 3,177,578 _c30410 PGA1_c30420: PGA1_c30420 - alanine dehydrogenase Ald, at 3,177,716 to 3,178,831 _c30420 Position (kb) 3177 3178Strain fitness (log2 ratio) -2 -1 0 1 2at 3176.150 kb on + strand, within PGA1_c30400at 3176.158 kb on - strand, within PGA1_c30400at 3176.159 kb on + strand, within PGA1_c30400at 3176.167 kb on - strand, within PGA1_c30400at 3176.178 kb on - strand, within PGA1_c30400at 3176.191 kb on - strand, within PGA1_c30400at 3176.199 kb on - strand, within PGA1_c30400at 3176.199 kb on - strand, within PGA1_c30400at 3176.220 kb on + strand, within PGA1_c30400at 3176.229 kb on + strand, within PGA1_c30400at 3176.233 kb on - strand, within PGA1_c30400at 3176.233 kb on - strand, within PGA1_c30400at 3176.238 kb on - strand, within PGA1_c30400at 3176.266 kb on - strand, within PGA1_c30400at 3176.266 kb on - strand, within PGA1_c30400at 3176.304 kb on + strand, within PGA1_c30400at 3176.312 kb on - strand, within PGA1_c30400at 3176.321 kb on - strand, within PGA1_c30400at 3176.323 kb on + strand, within PGA1_c30400at 3176.393 kb on - strand, within PGA1_c30400at 3176.444 kb on - strand, within PGA1_c30400at 3176.456 kb on + strand, within PGA1_c30400at 3176.492 kb on - strand, within PGA1_c30400at 3176.492 kb on - strand, within PGA1_c30400at 3176.514 kb on + strand, within PGA1_c30400at 3176.545 kb on + strand, within PGA1_c30400at 3176.558 kb on - strand, within PGA1_c30400at 3176.560 kb on + strand, within PGA1_c30400at 3176.565 kb on + strand, within PGA1_c30400at 3176.573 kb on - strand, within PGA1_c30400at 3176.617 kb on + strand, within PGA1_c30400at 3176.617 kb on + strand, within PGA1_c30400at 3176.617 kb on + strand, within PGA1_c30400at 3176.617 kb on + strand, within PGA1_c30400at 3176.617 kb on + strand, within PGA1_c30400at 3176.617 kb on + strand, within PGA1_c30400at 3176.625 kb on - strand, within PGA1_c30400at 3176.648 kb on - strand, within PGA1_c30400at 3176.658 kb on - strand, within PGA1_c30400at 3176.676 kb on - strand, within PGA1_c30400at 3176.676 kb on - strand, within PGA1_c30400at 3176.694 kb on - strand, within PGA1_c30400at 3176.768 kb on + strand, within PGA1_c30400at 3176.775 kb on + strand, within PGA1_c30400at 3176.776 kb on - strand, within PGA1_c30400at 3176.777 kb on - strand, within PGA1_c30400at 3176.806 kb on + strand, within PGA1_c30400at 3176.810 kb on - strand, within PGA1_c30400at 3176.814 kb on - strand, within PGA1_c30400at 3176.816 kb on + strand, within PGA1_c30400at 3176.817 kb on + strand, within PGA1_c30400at 3176.825 kb on - strand, within PGA1_c30400at 3176.829 kb on + strand, within PGA1_c30400at 3177.094 kb on + strandat 3177.453 kb on - strand, within PGA1_c30410at 3177.495 kb on - strand, within PGA1_c30410at 3177.664 kb on + strandat 3177.696 kb on + strandat 3177.713 kb on - strandat 3177.713 kb on - strandat 3177.737 kb on - strandat 3177.737 kb on - strandat 3177.739 kb on + strandat 3177.747 kb on - strandat 3177.773 kb on - strandat 3177.803 kb on + strandat 3177.828 kb on + strand, within PGA1_c30420at 3177.836 kb on - strand, within PGA1_c30420at 3177.836 kb on - strand, within PGA1_c30420at 3177.845 kb on + strand, within PGA1_c30420at 3177.860 kb on + strand, within PGA1_c30420at 3177.894 kb on + strand, within PGA1_c30420at 3177.899 kb on + strand, within PGA1_c30420at 3177.899 kb on + strand, within PGA1_c30420at 3177.907 kb on - strand, within PGA1_c30420at 3177.958 kb on + strand, within PGA1_c30420at 3177.966 kb on - strand, within PGA1_c30420at 3177.977 kb on + strand, within PGA1_c30420at 3177.994 kb on - strand, within PGA1_c30420at 3178.005 kb on - strand, within PGA1_c30420at 3178.011 kb on - strand, within PGA1_c30420at 3178.027 kb on - strand, within PGA1_c30420at 3178.152 kb on + strand, within PGA1_c30420at 3178.152 kb on + strand, within PGA1_c30420at 3178.152 kb on + strand, within PGA1_c30420at 3178.152 kb on + strand, within PGA1_c30420at 3178.152 kb on + strand, within PGA1_c30420at 3178.152 kb on + strand, within PGA1_c30420at 3178.160 kb on - strand, within PGA1_c30420at 3178.176 kb on - strand, within PGA1_c30420at 3178.187 kb on + strand, within PGA1_c30420at 3178.217 kb on - strand, within PGA1_c30420at 3178.265 kb on + strand, within PGA1_c30420at 3178.389 kb on + strand, within PGA1_c30420at 3178.389 kb on + strand, within PGA1_c30420at 3178.389 kb on + strand, within PGA1_c30420at 3178.397 kb on - strand, within PGA1_c30420at 3178.397 kb on - strand, within PGA1_c30420at 3178.438 kb on - strand, within PGA1_c30420at 3178.438 kb on - strand, within PGA1_c30420at 3178.438 kb on - strand, within PGA1_c30420at 3178.438 kb on - strand, within PGA1_c30420at 3178.494 kb on - strand, within PGA1_c30420at 3178.510 kb on - strand, within PGA1_c30420at 3178.510 kb on - strand, within PGA1_c30420at 3178.545 kb on + strand, within PGA1_c30420

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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3,176,150 + PGA1_c30400 0.45 +0.1
3,176,158 - PGA1_c30400 0.46 -1.1
3,176,159 + PGA1_c30400 0.46 +0.1
3,176,167 - PGA1_c30400 0.47 -0.4
3,176,178 - PGA1_c30400 0.47 -0.3
3,176,191 - PGA1_c30400 0.48 +0.8
3,176,199 - PGA1_c30400 0.49 +0.0
3,176,199 - PGA1_c30400 0.49 +0.3
3,176,220 + PGA1_c30400 0.50 +0.4
3,176,229 + PGA1_c30400 0.50 -1.6
3,176,233 - PGA1_c30400 0.51 +0.2
3,176,233 - PGA1_c30400 0.51 -0.3
3,176,238 - PGA1_c30400 0.51 +0.2
3,176,266 - PGA1_c30400 0.53 +0.1
3,176,266 - PGA1_c30400 0.53 -0.1
3,176,304 + PGA1_c30400 0.55 -0.4
3,176,312 - PGA1_c30400 0.56 +0.7
3,176,321 - PGA1_c30400 0.56 -0.6
3,176,323 + PGA1_c30400 0.56 -0.6
3,176,393 - PGA1_c30400 0.61 -0.5
3,176,444 - PGA1_c30400 0.64 +0.6
3,176,456 + PGA1_c30400 0.65 +0.4
3,176,492 - PGA1_c30400 0.67 -0.3
3,176,492 - PGA1_c30400 0.67 +0.5
3,176,514 + PGA1_c30400 0.68 +0.0
3,176,545 + PGA1_c30400 0.70 +0.1
3,176,558 - PGA1_c30400 0.71 -0.2
3,176,560 + PGA1_c30400 0.71 +2.1
3,176,565 + PGA1_c30400 0.72 +0.0
3,176,573 - PGA1_c30400 0.72 -1.4
3,176,617 + PGA1_c30400 0.75 +0.5
3,176,617 + PGA1_c30400 0.75 -0.6
3,176,617 + PGA1_c30400 0.75 +1.0
3,176,617 + PGA1_c30400 0.75 -0.6
3,176,617 + PGA1_c30400 0.75 +0.2
3,176,617 + PGA1_c30400 0.75 +0.4
3,176,625 - PGA1_c30400 0.75 -1.4
3,176,648 - PGA1_c30400 0.77 +0.7
3,176,658 - PGA1_c30400 0.77 -0.6
3,176,676 - PGA1_c30400 0.79 +0.7
3,176,676 - PGA1_c30400 0.79 +1.1
3,176,694 - PGA1_c30400 0.80 +0.1
3,176,768 + PGA1_c30400 0.84 -1.8
3,176,775 + PGA1_c30400 0.85 -0.3
3,176,776 - PGA1_c30400 0.85 +0.8
3,176,777 - PGA1_c30400 0.85 -0.6
3,176,806 + PGA1_c30400 0.87 -0.0
3,176,810 - PGA1_c30400 0.87 -0.3
3,176,814 - PGA1_c30400 0.87 -0.2
3,176,816 + PGA1_c30400 0.87 +0.7
3,176,817 + PGA1_c30400 0.87 -0.3
3,176,825 - PGA1_c30400 0.88 +0.2
3,176,829 + PGA1_c30400 0.88 -0.6
3,177,094 + -0.0
3,177,453 - PGA1_c30410 0.73 +0.7
3,177,495 - PGA1_c30410 0.82 +1.3
3,177,664 + +1.0
3,177,696 + +0.1
3,177,713 - -0.1
3,177,713 - -0.8
3,177,737 - +0.7
3,177,737 - +0.2
3,177,739 + +0.7
3,177,747 - +0.3
3,177,773 - +0.1
3,177,803 + +0.1
3,177,828 + PGA1_c30420 0.10 +0.1
3,177,836 - PGA1_c30420 0.11 +0.6
3,177,836 - PGA1_c30420 0.11 -0.9
3,177,845 + PGA1_c30420 0.12 -0.7
3,177,860 + PGA1_c30420 0.13 -0.2
3,177,894 + PGA1_c30420 0.16 -0.8
3,177,899 + PGA1_c30420 0.16 -0.6
3,177,899 + PGA1_c30420 0.16 -0.9
3,177,907 - PGA1_c30420 0.17 +1.3
3,177,958 + PGA1_c30420 0.22 -0.1
3,177,966 - PGA1_c30420 0.22 -1.6
3,177,977 + PGA1_c30420 0.23 -1.7
3,177,994 - PGA1_c30420 0.25 -0.6
3,178,005 - PGA1_c30420 0.26 -0.1
3,178,011 - PGA1_c30420 0.26 -0.3
3,178,027 - PGA1_c30420 0.28 -1.7
3,178,152 + PGA1_c30420 0.39 +0.0
3,178,152 + PGA1_c30420 0.39 +0.7
3,178,152 + PGA1_c30420 0.39 -1.1
3,178,152 + PGA1_c30420 0.39 +0.9
3,178,152 + PGA1_c30420 0.39 -0.9
3,178,152 + PGA1_c30420 0.39 -0.1
3,178,160 - PGA1_c30420 0.40 +0.2
3,178,176 - PGA1_c30420 0.41 -0.6
3,178,187 + PGA1_c30420 0.42 +0.1
3,178,217 - PGA1_c30420 0.45 +0.2
3,178,265 + PGA1_c30420 0.49 -0.7
3,178,389 + PGA1_c30420 0.60 -0.1
3,178,389 + PGA1_c30420 0.60 -0.3
3,178,389 + PGA1_c30420 0.60 +0.7
3,178,397 - PGA1_c30420 0.61 -0.0
3,178,397 - PGA1_c30420 0.61 +1.0
3,178,438 - PGA1_c30420 0.65 -0.6
3,178,438 - PGA1_c30420 0.65 -0.4
3,178,438 - PGA1_c30420 0.65 -0.6
3,178,438 - PGA1_c30420 0.65 +0.7
3,178,494 - PGA1_c30420 0.70 +0.2
3,178,510 - PGA1_c30420 0.71 -0.9
3,178,510 - PGA1_c30420 0.71 -1.0
3,178,545 + PGA1_c30420 0.74 +0.4

Or see this region's nucleotide sequence