Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02520

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02510 and PGA1_c02520 are separated by 330 nucleotidesPGA1_c02520 and PGA1_c02530 overlap by 4 nucleotidesPGA1_c02530 and PGA1_c02540 are separated by 301 nucleotides PGA1_c02510: PGA1_c02510 - S-(hydroxymethyl)glutathione dehydrogenase FrmA, at 234,618 to 235,733 _c02510 PGA1_c02520: PGA1_c02520 - copper-transporting P-type ATPase ActP, at 236,064 to 238,580 _c02520 PGA1_c02530: PGA1_c02530 - HTH-type transcriptional regulator, at 238,577 to 238,981 _c02530 PGA1_c02540: PGA1_c02540 - Uncharacterized conserved protein, at 239,283 to 240,119 _c02540 Position (kb) 236 237 238 239Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 235.066 kb on + strand, within PGA1_c02510at 235.074 kb on - strand, within PGA1_c02510at 235.091 kb on + strand, within PGA1_c02510at 235.091 kb on + strand, within PGA1_c02510at 235.110 kb on - strand, within PGA1_c02510at 235.186 kb on + strand, within PGA1_c02510at 235.188 kb on + strand, within PGA1_c02510at 235.188 kb on + strand, within PGA1_c02510at 235.231 kb on + strand, within PGA1_c02510at 235.242 kb on + strand, within PGA1_c02510at 235.351 kb on + strand, within PGA1_c02510at 235.353 kb on + strand, within PGA1_c02510at 235.369 kb on - strand, within PGA1_c02510at 235.369 kb on - strand, within PGA1_c02510at 235.369 kb on - strand, within PGA1_c02510at 235.369 kb on - strand, within PGA1_c02510at 235.382 kb on + strand, within PGA1_c02510at 235.390 kb on - strand, within PGA1_c02510at 235.493 kb on + strand, within PGA1_c02510at 235.493 kb on + strand, within PGA1_c02510at 235.493 kb on + strand, within PGA1_c02510at 235.501 kb on - strand, within PGA1_c02510at 235.501 kb on - strand, within PGA1_c02510at 235.501 kb on - strand, within PGA1_c02510at 235.501 kb on - strand, within PGA1_c02510at 235.501 kb on - strand, within PGA1_c02510at 235.501 kb on - strand, within PGA1_c02510at 235.501 kb on - strand, within PGA1_c02510at 235.501 kb on - strand, within PGA1_c02510at 235.501 kb on - strand, within PGA1_c02510at 235.501 kb on - strand, within PGA1_c02510at 235.511 kb on - strand, within PGA1_c02510at 235.661 kb on + strandat 235.668 kb on - strandat 235.698 kb on - strandat 235.707 kb on + strandat 235.707 kb on + strandat 235.811 kb on + strandat 235.818 kb on + strandat 235.932 kb on + strandat 235.994 kb on - strandat 236.026 kb on + strandat 236.034 kb on - strandat 236.159 kb on + strandat 236.300 kb on + strandat 236.308 kb on - strandat 236.315 kb on - strandat 236.315 kb on - strandat 236.315 kb on - strandat 236.355 kb on - strand, within PGA1_c02520at 236.379 kb on + strand, within PGA1_c02520at 236.379 kb on + strand, within PGA1_c02520at 236.424 kb on + strand, within PGA1_c02520at 236.444 kb on - strand, within PGA1_c02520at 236.447 kb on + strand, within PGA1_c02520at 236.577 kb on + strand, within PGA1_c02520at 236.585 kb on - strand, within PGA1_c02520at 236.600 kb on + strand, within PGA1_c02520at 236.664 kb on + strand, within PGA1_c02520at 236.706 kb on - strand, within PGA1_c02520at 236.716 kb on - strand, within PGA1_c02520at 236.716 kb on - strand, within PGA1_c02520at 236.718 kb on + strand, within PGA1_c02520at 236.721 kb on - strand, within PGA1_c02520at 236.746 kb on - strand, within PGA1_c02520at 236.753 kb on + strand, within PGA1_c02520at 236.753 kb on + strand, within PGA1_c02520at 236.759 kb on - strand, within PGA1_c02520at 236.789 kb on + strand, within PGA1_c02520at 236.799 kb on + strand, within PGA1_c02520at 236.805 kb on + strand, within PGA1_c02520at 236.813 kb on - strand, within PGA1_c02520at 236.826 kb on - strand, within PGA1_c02520at 236.920 kb on + strand, within PGA1_c02520at 236.928 kb on - strand, within PGA1_c02520at 236.940 kb on - strand, within PGA1_c02520at 236.981 kb on + strand, within PGA1_c02520at 236.989 kb on - strand, within PGA1_c02520at 237.000 kb on + strand, within PGA1_c02520at 237.008 kb on + strand, within PGA1_c02520at 237.016 kb on - strand, within PGA1_c02520at 237.080 kb on - strand, within PGA1_c02520at 237.084 kb on + strand, within PGA1_c02520at 237.094 kb on + strand, within PGA1_c02520at 237.099 kb on + strand, within PGA1_c02520at 237.139 kb on + strand, within PGA1_c02520at 237.236 kb on - strand, within PGA1_c02520at 237.281 kb on + strand, within PGA1_c02520at 237.289 kb on - strand, within PGA1_c02520at 237.394 kb on + strand, within PGA1_c02520at 237.407 kb on - strand, within PGA1_c02520at 237.422 kb on + strand, within PGA1_c02520at 237.422 kb on + strand, within PGA1_c02520at 237.450 kb on + strand, within PGA1_c02520at 237.455 kb on + strand, within PGA1_c02520at 237.456 kb on - strand, within PGA1_c02520at 237.458 kb on - strand, within PGA1_c02520at 237.516 kb on - strand, within PGA1_c02520at 237.590 kb on + strand, within PGA1_c02520at 237.592 kb on - strand, within PGA1_c02520at 237.592 kb on - strand, within PGA1_c02520at 237.603 kb on + strand, within PGA1_c02520at 237.619 kb on + strand, within PGA1_c02520at 237.627 kb on + strand, within PGA1_c02520at 237.627 kb on + strand, within PGA1_c02520at 237.627 kb on + strand, within PGA1_c02520at 237.637 kb on + strand, within PGA1_c02520at 237.645 kb on - strand, within PGA1_c02520at 237.645 kb on - strand, within PGA1_c02520at 237.716 kb on + strand, within PGA1_c02520at 237.724 kb on - strand, within PGA1_c02520at 237.761 kb on + strand, within PGA1_c02520at 237.785 kb on - strand, within PGA1_c02520at 237.786 kb on - strand, within PGA1_c02520at 237.859 kb on - strand, within PGA1_c02520at 238.020 kb on - strand, within PGA1_c02520at 238.020 kb on - strand, within PGA1_c02520at 238.071 kb on + strand, within PGA1_c02520at 238.071 kb on + strand, within PGA1_c02520at 238.111 kb on + strand, within PGA1_c02520at 238.126 kb on + strand, within PGA1_c02520at 238.134 kb on - strand, within PGA1_c02520at 238.134 kb on - strand, within PGA1_c02520at 238.134 kb on - strand, within PGA1_c02520at 238.155 kb on + strand, within PGA1_c02520at 238.155 kb on + strand, within PGA1_c02520at 238.163 kb on - strand, within PGA1_c02520at 238.169 kb on + strand, within PGA1_c02520at 238.186 kb on - strand, within PGA1_c02520at 238.193 kb on + strand, within PGA1_c02520at 238.239 kb on + strand, within PGA1_c02520at 238.239 kb on + strand, within PGA1_c02520at 238.266 kb on + strand, within PGA1_c02520at 238.271 kb on + strand, within PGA1_c02520at 238.271 kb on + strand, within PGA1_c02520at 238.279 kb on - strand, within PGA1_c02520at 238.284 kb on - strand, within PGA1_c02520at 238.350 kb on + strandat 238.401 kb on + strandat 238.407 kb on - strandat 238.450 kb on - strandat 238.462 kb on + strandat 238.495 kb on + strandat 238.495 kb on + strandat 238.495 kb on + strandat 238.500 kb on - strandat 238.531 kb on - strandat 238.531 kb on - strandat 238.562 kb on - strandat 238.574 kb on + strandat 238.582 kb on + strandat 238.592 kb on - strandat 238.621 kb on + strand, within PGA1_c02530at 238.621 kb on + strand, within PGA1_c02530at 238.623 kb on - strand, within PGA1_c02530at 238.646 kb on + strand, within PGA1_c02530at 238.649 kb on - strand, within PGA1_c02530at 238.650 kb on - strand, within PGA1_c02530at 238.651 kb on + strand, within PGA1_c02530at 238.651 kb on + strand, within PGA1_c02530at 238.651 kb on + strand, within PGA1_c02530at 238.696 kb on + strand, within PGA1_c02530at 238.703 kb on - strand, within PGA1_c02530at 238.708 kb on - strand, within PGA1_c02530at 238.732 kb on - strand, within PGA1_c02530at 238.803 kb on + strand, within PGA1_c02530at 238.895 kb on + strand, within PGA1_c02530at 238.896 kb on - strand, within PGA1_c02530at 238.903 kb on - strand, within PGA1_c02530at 238.913 kb on + strand, within PGA1_c02530at 238.913 kb on + strand, within PGA1_c02530at 238.913 kb on + strand, within PGA1_c02530at 238.913 kb on + strand, within PGA1_c02530at 238.913 kb on + strand, within PGA1_c02530at 238.921 kb on - strand, within PGA1_c02530at 238.921 kb on - strand, within PGA1_c02530at 238.922 kb on + strand, within PGA1_c02530at 238.932 kb on + strand, within PGA1_c02530at 238.932 kb on + strand, within PGA1_c02530at 238.940 kb on - strand, within PGA1_c02530at 239.033 kb on - strandat 239.033 kb on - strandat 239.033 kb on - strandat 239.033 kb on - strandat 239.053 kb on + strandat 239.071 kb on + strandat 239.071 kb on + strandat 239.073 kb on + strandat 239.079 kb on - strandat 239.079 kb on - strandat 239.079 kb on - strandat 239.080 kb on - strandat 239.081 kb on - strandat 239.217 kb on - strandat 239.217 kb on - strandat 239.242 kb on - strandat 239.259 kb on - strandat 239.259 kb on - strandat 239.264 kb on - strandat 239.271 kb on - strandat 239.313 kb on + strandat 239.331 kb on + strandat 239.371 kb on - strand, within PGA1_c02540at 239.371 kb on - strand, within PGA1_c02540at 239.374 kb on + strand, within PGA1_c02540at 239.548 kb on + strand, within PGA1_c02540at 239.548 kb on + strand, within PGA1_c02540

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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235,066 + PGA1_c02510 0.40 +0.0
235,074 - PGA1_c02510 0.41 +0.4
235,091 + PGA1_c02510 0.42 +0.2
235,091 + PGA1_c02510 0.42 -0.3
235,110 - PGA1_c02510 0.44 +1.2
235,186 + PGA1_c02510 0.51 +0.1
235,188 + PGA1_c02510 0.51 +1.1
235,188 + PGA1_c02510 0.51 +0.4
235,231 + PGA1_c02510 0.55 -0.0
235,242 + PGA1_c02510 0.56 -0.6
235,351 + PGA1_c02510 0.66 -1.9
235,353 + PGA1_c02510 0.66 -0.8
235,369 - PGA1_c02510 0.67 +0.6
235,369 - PGA1_c02510 0.67 -0.2
235,369 - PGA1_c02510 0.67 -0.3
235,369 - PGA1_c02510 0.67 +0.5
235,382 + PGA1_c02510 0.68 -0.7
235,390 - PGA1_c02510 0.69 -0.8
235,493 + PGA1_c02510 0.78 +0.4
235,493 + PGA1_c02510 0.78 -0.8
235,493 + PGA1_c02510 0.78 -1.5
235,501 - PGA1_c02510 0.79 +0.1
235,501 - PGA1_c02510 0.79 -1.9
235,501 - PGA1_c02510 0.79 -0.2
235,501 - PGA1_c02510 0.79 +0.2
235,501 - PGA1_c02510 0.79 +0.6
235,501 - PGA1_c02510 0.79 +1.0
235,501 - PGA1_c02510 0.79 -0.0
235,501 - PGA1_c02510 0.79 +0.6
235,501 - PGA1_c02510 0.79 -0.7
235,501 - PGA1_c02510 0.79 +0.5
235,511 - PGA1_c02510 0.80 +0.1
235,661 + -0.0
235,668 - +0.1
235,698 - -0.0
235,707 + +0.2
235,707 + +0.1
235,811 + +0.7
235,818 + +0.2
235,932 + -0.4
235,994 - -0.2
236,026 + -0.6
236,034 - +0.2
236,159 + -0.2
236,300 + -2.0
236,308 - -2.8
236,315 - -1.9
236,315 - -1.7
236,315 - -2.8
236,355 - PGA1_c02520 0.12 -1.4
236,379 + PGA1_c02520 0.13 -1.6
236,379 + PGA1_c02520 0.13 -2.6
236,424 + PGA1_c02520 0.14 -2.8
236,444 - PGA1_c02520 0.15 -3.4
236,447 + PGA1_c02520 0.15 -2.4
236,577 + PGA1_c02520 0.20 -1.6
236,585 - PGA1_c02520 0.21 -2.2
236,600 + PGA1_c02520 0.21 -2.3
236,664 + PGA1_c02520 0.24 -1.2
236,706 - PGA1_c02520 0.26 -1.8
236,716 - PGA1_c02520 0.26 -1.6
236,716 - PGA1_c02520 0.26 -2.0
236,718 + PGA1_c02520 0.26 -2.6
236,721 - PGA1_c02520 0.26 -0.9
236,746 - PGA1_c02520 0.27 -3.4
236,753 + PGA1_c02520 0.27 -2.0
236,753 + PGA1_c02520 0.27 -1.4
236,759 - PGA1_c02520 0.28 -1.1
236,789 + PGA1_c02520 0.29 -1.5
236,799 + PGA1_c02520 0.29 -1.8
236,805 + PGA1_c02520 0.29 -0.2
236,813 - PGA1_c02520 0.30 -2.0
236,826 - PGA1_c02520 0.30 -1.5
236,920 + PGA1_c02520 0.34 -0.6
236,928 - PGA1_c02520 0.34 -1.6
236,940 - PGA1_c02520 0.35 -1.2
236,981 + PGA1_c02520 0.36 -3.0
236,989 - PGA1_c02520 0.37 -3.4
237,000 + PGA1_c02520 0.37 -3.2
237,008 + PGA1_c02520 0.38 -2.4
237,016 - PGA1_c02520 0.38 -3.1
237,080 - PGA1_c02520 0.40 -1.0
237,084 + PGA1_c02520 0.41 -2.2
237,094 + PGA1_c02520 0.41 -1.0
237,099 + PGA1_c02520 0.41 -2.6
237,139 + PGA1_c02520 0.43 -0.5
237,236 - PGA1_c02520 0.47 -2.0
237,281 + PGA1_c02520 0.48 -2.3
237,289 - PGA1_c02520 0.49 -2.1
237,394 + PGA1_c02520 0.53 -1.7
237,407 - PGA1_c02520 0.53 -0.5
237,422 + PGA1_c02520 0.54 -2.4
237,422 + PGA1_c02520 0.54 -2.5
237,450 + PGA1_c02520 0.55 -1.1
237,455 + PGA1_c02520 0.55 -1.0
237,456 - PGA1_c02520 0.55 -4.2
237,458 - PGA1_c02520 0.55 -1.8
237,516 - PGA1_c02520 0.58 -1.2
237,590 + PGA1_c02520 0.61 -1.5
237,592 - PGA1_c02520 0.61 -3.3
237,592 - PGA1_c02520 0.61 -2.1
237,603 + PGA1_c02520 0.61 -2.2
237,619 + PGA1_c02520 0.62 -1.5
237,627 + PGA1_c02520 0.62 -2.3
237,627 + PGA1_c02520 0.62 -1.2
237,627 + PGA1_c02520 0.62 -2.1
237,637 + PGA1_c02520 0.62 -1.6
237,645 - PGA1_c02520 0.63 -1.6
237,645 - PGA1_c02520 0.63 -2.2
237,716 + PGA1_c02520 0.66 -2.4
237,724 - PGA1_c02520 0.66 -2.2
237,761 + PGA1_c02520 0.67 -2.3
237,785 - PGA1_c02520 0.68 -4.2
237,786 - PGA1_c02520 0.68 -1.2
237,859 - PGA1_c02520 0.71 -1.6
238,020 - PGA1_c02520 0.78 -2.6
238,020 - PGA1_c02520 0.78 -1.6
238,071 + PGA1_c02520 0.80 -3.7
238,071 + PGA1_c02520 0.80 -1.1
238,111 + PGA1_c02520 0.81 -2.1
238,126 + PGA1_c02520 0.82 -0.6
238,134 - PGA1_c02520 0.82 -2.0
238,134 - PGA1_c02520 0.82 -1.2
238,134 - PGA1_c02520 0.82 -2.4
238,155 + PGA1_c02520 0.83 -3.1
238,155 + PGA1_c02520 0.83 -2.0
238,163 - PGA1_c02520 0.83 -0.8
238,169 + PGA1_c02520 0.84 -1.8
238,186 - PGA1_c02520 0.84 -1.9
238,193 + PGA1_c02520 0.85 -2.3
238,239 + PGA1_c02520 0.86 -1.4
238,239 + PGA1_c02520 0.86 -1.7
238,266 + PGA1_c02520 0.87 -3.1
238,271 + PGA1_c02520 0.88 +0.5
238,271 + PGA1_c02520 0.88 -1.6
238,279 - PGA1_c02520 0.88 -2.9
238,284 - PGA1_c02520 0.88 -1.2
238,350 + -1.9
238,401 + -2.0
238,407 - -2.8
238,450 - -1.0
238,462 + -1.2
238,495 + +1.5
238,495 + -0.4
238,495 + -0.3
238,500 - -0.8
238,531 - +0.7
238,531 - -1.4
238,562 - -0.9
238,574 + -2.2
238,582 + -2.0
238,592 - -2.4
238,621 + PGA1_c02530 0.11 -2.3
238,621 + PGA1_c02530 0.11 -1.5
238,623 - PGA1_c02530 0.11 -0.5
238,646 + PGA1_c02530 0.17 -2.4
238,649 - PGA1_c02530 0.18 -1.6
238,650 - PGA1_c02530 0.18 +0.0
238,651 + PGA1_c02530 0.18 -1.9
238,651 + PGA1_c02530 0.18 -2.0
238,651 + PGA1_c02530 0.18 -1.2
238,696 + PGA1_c02530 0.29 -3.5
238,703 - PGA1_c02530 0.31 -1.8
238,708 - PGA1_c02530 0.32 -2.3
238,732 - PGA1_c02530 0.38 -2.2
238,803 + PGA1_c02530 0.56 -3.1
238,895 + PGA1_c02530 0.79 -1.4
238,896 - PGA1_c02530 0.79 -1.1
238,903 - PGA1_c02530 0.80 -2.0
238,913 + PGA1_c02530 0.83 -3.0
238,913 + PGA1_c02530 0.83 -0.7
238,913 + PGA1_c02530 0.83 -0.9
238,913 + PGA1_c02530 0.83 -3.8
238,913 + PGA1_c02530 0.83 -2.2
238,921 - PGA1_c02530 0.85 -2.4
238,921 - PGA1_c02530 0.85 -3.6
238,922 + PGA1_c02530 0.85 -2.4
238,932 + PGA1_c02530 0.88 -0.4
238,932 + PGA1_c02530 0.88 -2.7
238,940 - PGA1_c02530 0.90 -3.2
239,033 - -0.1
239,033 - -1.6
239,033 - +0.7
239,033 - -2.3
239,053 + -0.9
239,071 + +0.1
239,071 + +1.2
239,073 + +0.8
239,079 - +0.3
239,079 - -1.1
239,079 - -0.4
239,080 - -0.4
239,081 - +0.2
239,217 - +0.1
239,217 - +0.7
239,242 - +1.5
239,259 - +0.7
239,259 - -0.4
239,264 - +0.4
239,271 - -0.7
239,313 + +0.4
239,331 + +0.6
239,371 - PGA1_c02540 0.11 +0.3
239,371 - PGA1_c02540 0.11 +0.1
239,374 + PGA1_c02540 0.11 +0.6
239,548 + PGA1_c02540 0.32 +0.2
239,548 + PGA1_c02540 0.32 -0.8

Or see this region's nucleotide sequence