Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01900 and PGA1_c01910 are separated by 146 nucleotides PGA1_c01910 and PGA1_c01920 are separated by 190 nucleotides PGA1_c01920 and PGA1_c01930 are separated by 2 nucleotides
PGA1_c01900: PGA1_c01900 - DNA-directed RNA polymerase subunit alpha, at 172,906 to 173,922
_c01900
PGA1_c01910: PGA1_c01910 - 50S ribosomal protein L17, at 174,069 to 174,491
_c01910
PGA1_c01920: PGA1_c01920 - protease DegQ, at 174,682 to 176,079
_c01920
PGA1_c01930: PGA1_c01930 - replication-associated recombination protein A, at 176,082 to 177,404
_c01930
Position (kb) 174
175
176
177 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 173.929 kb on + strand at 174.654 kb on - strand at 174.694 kb on + strand at 174.702 kb on - strand at 174.714 kb on + strand at 174.722 kb on - strand at 174.742 kb on - strand at 174.742 kb on - strand at 174.742 kb on - strand at 174.742 kb on - strand at 174.747 kb on - strand at 174.821 kb on + strand at 174.874 kb on + strand, within PGA1_c01920 at 174.924 kb on + strand, within PGA1_c01920 at 174.926 kb on - strand, within PGA1_c01920 at 174.933 kb on - strand, within PGA1_c01920 at 174.933 kb on - strand, within PGA1_c01920 at 174.937 kb on + strand, within PGA1_c01920 at 174.945 kb on - strand, within PGA1_c01920 at 174.947 kb on + strand, within PGA1_c01920 at 174.953 kb on + strand, within PGA1_c01920 at 174.958 kb on + strand, within PGA1_c01920 at 174.958 kb on + strand, within PGA1_c01920 at 174.958 kb on + strand, within PGA1_c01920 at 174.958 kb on + strand, within PGA1_c01920 at 174.961 kb on - strand, within PGA1_c01920 at 174.961 kb on - strand, within PGA1_c01920 at 175.022 kb on - strand, within PGA1_c01920 at 175.022 kb on - strand, within PGA1_c01920 at 175.117 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.188 kb on + strand, within PGA1_c01920 at 175.259 kb on + strand, within PGA1_c01920 at 175.266 kb on - strand, within PGA1_c01920 at 175.288 kb on - strand, within PGA1_c01920 at 175.310 kb on - strand, within PGA1_c01920 at 175.487 kb on - strand, within PGA1_c01920 at 175.498 kb on - strand, within PGA1_c01920 at 175.529 kb on + strand, within PGA1_c01920 at 175.702 kb on + strand, within PGA1_c01920 at 175.737 kb on + strand, within PGA1_c01920 at 175.738 kb on - strand, within PGA1_c01920 at 175.793 kb on + strand, within PGA1_c01920 at 175.793 kb on + strand, within PGA1_c01920 at 175.801 kb on - strand, within PGA1_c01920 at 175.870 kb on + strand, within PGA1_c01920 at 175.885 kb on - strand, within PGA1_c01920 at 175.928 kb on + strand, within PGA1_c01920 at 175.982 kb on + strand at 176.042 kb on + strand at 176.140 kb on - strand at 176.247 kb on + strand, within PGA1_c01930 at 176.336 kb on - strand, within PGA1_c01930 at 176.336 kb on - strand, within PGA1_c01930 at 176.345 kb on + strand, within PGA1_c01930 at 176.431 kb on - strand, within PGA1_c01930 at 176.506 kb on - strand, within PGA1_c01930 at 176.538 kb on - strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.570 kb on - strand, within PGA1_c01930 at 176.570 kb on - strand, within PGA1_c01930 at 176.579 kb on + strand, within PGA1_c01930 at 176.651 kb on - strand, within PGA1_c01930 at 176.656 kb on + strand, within PGA1_c01930 at 176.789 kb on - strand, within PGA1_c01930 at 176.861 kb on + strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.878 kb on + strand, within PGA1_c01930 at 176.878 kb on + strand, within PGA1_c01930 at 176.878 kb on + strand, within PGA1_c01930 at 176.886 kb on - strand, within PGA1_c01930 at 176.886 kb on - strand, within PGA1_c01930 at 176.900 kb on + strand, within PGA1_c01930 at 177.031 kb on - strand, within PGA1_c01930 at 177.034 kb on + strand, within PGA1_c01930 at 177.074 kb on + strand, within PGA1_c01930
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 173,929 + -0.7 174,654 - +0.3 174,694 + +0.4 174,702 - -0.2 174,714 + -0.3 174,722 - +0.9 174,742 - -0.8 174,742 - -1.2 174,742 - -1.2 174,742 - +0.2 174,747 - -1.7 174,821 + -0.2 174,874 + PGA1_c01920 0.14 -0.9 174,924 + PGA1_c01920 0.17 -0.4 174,926 - PGA1_c01920 0.17 -1.9 174,933 - PGA1_c01920 0.18 -1.2 174,933 - PGA1_c01920 0.18 -2.0 174,937 + PGA1_c01920 0.18 -1.4 174,945 - PGA1_c01920 0.19 -2.4 174,947 + PGA1_c01920 0.19 -1.2 174,953 + PGA1_c01920 0.19 -1.0 174,958 + PGA1_c01920 0.20 -1.1 174,958 + PGA1_c01920 0.20 -1.5 174,958 + PGA1_c01920 0.20 -1.1 174,958 + PGA1_c01920 0.20 -1.0 174,961 - PGA1_c01920 0.20 -1.6 174,961 - PGA1_c01920 0.20 -1.2 175,022 - PGA1_c01920 0.24 -1.3 175,022 - PGA1_c01920 0.24 +0.0 175,117 + PGA1_c01920 0.31 -1.0 175,133 + PGA1_c01920 0.32 -0.1 175,133 + PGA1_c01920 0.32 -1.0 175,133 + PGA1_c01920 0.32 -1.3 175,133 + PGA1_c01920 0.32 -1.4 175,133 + PGA1_c01920 0.32 -0.5 175,133 + PGA1_c01920 0.32 +0.6 175,133 + PGA1_c01920 0.32 -0.7 175,141 - PGA1_c01920 0.33 -0.2 175,141 - PGA1_c01920 0.33 -3.1 175,141 - PGA1_c01920 0.33 -2.1 175,141 - PGA1_c01920 0.33 -1.5 175,141 - PGA1_c01920 0.33 -0.2 175,141 - PGA1_c01920 0.33 +0.6 175,141 - PGA1_c01920 0.33 -0.8 175,141 - PGA1_c01920 0.33 -1.7 175,141 - PGA1_c01920 0.33 -2.3 175,188 + PGA1_c01920 0.36 -1.4 175,259 + PGA1_c01920 0.41 -0.2 175,266 - PGA1_c01920 0.42 -1.9 175,288 - PGA1_c01920 0.43 -0.1 175,310 - PGA1_c01920 0.45 -1.7 175,487 - PGA1_c01920 0.58 -1.6 175,498 - PGA1_c01920 0.58 -1.0 175,529 + PGA1_c01920 0.61 -1.3 175,702 + PGA1_c01920 0.73 -0.9 175,737 + PGA1_c01920 0.75 -1.7 175,738 - PGA1_c01920 0.76 -0.6 175,793 + PGA1_c01920 0.79 -1.1 175,793 + PGA1_c01920 0.79 +0.7 175,801 - PGA1_c01920 0.80 -1.1 175,870 + PGA1_c01920 0.85 -3.6 175,885 - PGA1_c01920 0.86 -1.5 175,928 + PGA1_c01920 0.89 -2.4 175,982 + -1.1 176,042 + -1.0 176,140 - -0.6 176,247 + PGA1_c01930 0.12 -0.0 176,336 - PGA1_c01930 0.19 -1.8 176,336 - PGA1_c01930 0.19 +0.8 176,345 + PGA1_c01930 0.20 +1.2 176,431 - PGA1_c01930 0.26 +1.4 176,506 - PGA1_c01930 0.32 +1.2 176,538 - PGA1_c01930 0.34 -0.1 176,562 + PGA1_c01930 0.36 -0.3 176,562 + PGA1_c01930 0.36 +0.2 176,562 + PGA1_c01930 0.36 +0.5 176,562 + PGA1_c01930 0.36 -0.5 176,562 + PGA1_c01930 0.36 -0.2 176,562 + PGA1_c01930 0.36 -0.1 176,570 - PGA1_c01930 0.37 -0.2 176,570 - PGA1_c01930 0.37 +0.4 176,579 + PGA1_c01930 0.38 +0.4 176,651 - PGA1_c01930 0.43 -0.6 176,656 + PGA1_c01930 0.43 +0.9 176,789 - PGA1_c01930 0.53 -0.3 176,861 + PGA1_c01930 0.59 -0.5 176,869 - PGA1_c01930 0.59 -0.3 176,869 - PGA1_c01930 0.59 +0.0 176,869 - PGA1_c01930 0.59 -1.9 176,869 - PGA1_c01930 0.59 +1.4 176,869 - PGA1_c01930 0.59 -0.3 176,869 - PGA1_c01930 0.59 -0.6 176,869 - PGA1_c01930 0.59 +0.3 176,878 + PGA1_c01930 0.60 -0.2 176,878 + PGA1_c01930 0.60 +0.8 176,878 + PGA1_c01930 0.60 +0.3 176,886 - PGA1_c01930 0.61 +1.6 176,886 - PGA1_c01930 0.61 +0.1 176,900 + PGA1_c01930 0.62 -0.0 177,031 - PGA1_c01930 0.72 +0.2 177,034 + PGA1_c01930 0.72 -0.5 177,074 + PGA1_c01930 0.75 -0.1
Or see this region's nucleotide sequence