Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01320 and PGA1_c01330 are separated by 398 nucleotides PGA1_c01330 and PGA1_c01340 are separated by 116 nucleotides PGA1_c01340 and PGA1_c01350 are separated by 193 nucleotides
PGA1_c01320: PGA1_c01320 - elongation factor Tu, at 124,097 to 125,272
_c01320
PGA1_c01330: PGA1_c01330 - Uncharacterized protein conserved in bacteria, at 125,671 to 126,417
_c01330
PGA1_c01340: PGA1_c01340 - tRNA-Trp, at 126,534 to 126,609
_c01340
PGA1_c01350: PGA1_c01350 - putative UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase, at 126,803 to 128,995
_c01350
Position (kb) 125
126
127 Strain fitness (log2 ratio) -2
-1
0
1 at 125.401 kb on + strand at 125.401 kb on + strand at 125.401 kb on + strand at 125.401 kb on + strand at 125.401 kb on + strand at 125.401 kb on + strand at 125.401 kb on + strand at 125.409 kb on - strand at 125.409 kb on - strand at 125.409 kb on - strand at 125.409 kb on - strand at 125.409 kb on - strand at 125.409 kb on - strand at 125.411 kb on + strand at 125.411 kb on + strand at 125.424 kb on + strand at 125.488 kb on - strand at 125.489 kb on - strand at 125.526 kb on - strand at 125.526 kb on - strand at 125.526 kb on - strand at 125.588 kb on + strand at 125.588 kb on + strand at 125.588 kb on + strand at 125.588 kb on + strand at 125.588 kb on + strand at 125.594 kb on - strand at 125.596 kb on - strand at 125.692 kb on + strand at 125.692 kb on + strand at 125.700 kb on - strand at 125.759 kb on - strand, within PGA1_c01330 at 125.808 kb on + strand, within PGA1_c01330 at 125.816 kb on - strand, within PGA1_c01330 at 125.821 kb on - strand, within PGA1_c01330 at 125.968 kb on - strand, within PGA1_c01330 at 125.968 kb on - strand, within PGA1_c01330 at 125.968 kb on - strand, within PGA1_c01330 at 126.039 kb on - strand, within PGA1_c01330 at 126.375 kb on + strand at 126.375 kb on + strand at 126.375 kb on + strand at 126.383 kb on - strand at 126.383 kb on - strand at 126.383 kb on - strand at 126.383 kb on - strand at 126.451 kb on + strand at 126.632 kb on + strand at 126.766 kb on + strand at 126.818 kb on - strand at 126.833 kb on - strand at 126.835 kb on + strand at 126.838 kb on - strand at 126.843 kb on - strand at 126.843 kb on - strand at 126.843 kb on - strand at 126.915 kb on + strand at 126.958 kb on + strand at 126.975 kb on + strand at 126.975 kb on + strand at 126.975 kb on + strand at 126.990 kb on + strand at 126.998 kb on - strand at 127.005 kb on + strand at 127.005 kb on + strand at 127.063 kb on - strand, within PGA1_c01350 at 127.071 kb on + strand, within PGA1_c01350 at 127.071 kb on + strand, within PGA1_c01350 at 127.076 kb on + strand, within PGA1_c01350 at 127.076 kb on + strand, within PGA1_c01350 at 127.079 kb on - strand, within PGA1_c01350 at 127.079 kb on - strand, within PGA1_c01350 at 127.084 kb on - strand, within PGA1_c01350 at 127.084 kb on - strand, within PGA1_c01350 at 127.084 kb on - strand, within PGA1_c01350 at 127.192 kb on + strand, within PGA1_c01350 at 127.264 kb on - strand, within PGA1_c01350 at 127.280 kb on + strand, within PGA1_c01350 at 127.281 kb on + strand, within PGA1_c01350 at 127.281 kb on + strand, within PGA1_c01350 at 127.289 kb on - strand, within PGA1_c01350 at 127.289 kb on - strand, within PGA1_c01350 at 127.289 kb on - strand, within PGA1_c01350 at 127.289 kb on - strand, within PGA1_c01350 at 127.315 kb on - strand, within PGA1_c01350 at 127.326 kb on + strand, within PGA1_c01350
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 125,401 + -0.4 125,401 + -0.0 125,401 + +0.2 125,401 + +0.3 125,401 + +1.0 125,401 + +1.4 125,401 + +0.1 125,409 - -0.7 125,409 - +0.1 125,409 - +0.4 125,409 - +1.1 125,409 - -1.6 125,409 - -0.2 125,411 + +0.2 125,411 + -0.7 125,424 + +0.4 125,488 - +0.2 125,489 - -0.1 125,526 - -0.1 125,526 - +1.1 125,526 - -0.1 125,588 + +0.1 125,588 + +0.2 125,588 + +0.2 125,588 + -0.3 125,588 + -0.8 125,594 - -1.0 125,596 - -0.3 125,692 + -1.6 125,692 + +0.8 125,700 - -0.6 125,759 - PGA1_c01330 0.12 -2.6 125,808 + PGA1_c01330 0.18 -1.0 125,816 - PGA1_c01330 0.19 -2.4 125,821 - PGA1_c01330 0.20 -2.1 125,968 - PGA1_c01330 0.40 -0.2 125,968 - PGA1_c01330 0.40 -0.8 125,968 - PGA1_c01330 0.40 -0.1 126,039 - PGA1_c01330 0.49 -0.6 126,375 + +0.4 126,375 + -0.5 126,375 + +0.1 126,383 - -0.3 126,383 - +0.1 126,383 - -0.8 126,383 - +0.4 126,451 + -0.1 126,632 + -0.2 126,766 + +0.0 126,818 - -0.9 126,833 - -0.4 126,835 + +0.2 126,838 - -0.1 126,843 - -0.9 126,843 - -0.4 126,843 - +0.6 126,915 + -1.5 126,958 + -0.5 126,975 + +0.1 126,975 + -0.3 126,975 + +0.0 126,990 + -1.3 126,998 - +0.4 127,005 + -0.5 127,005 + -0.3 127,063 - PGA1_c01350 0.12 +1.4 127,071 + PGA1_c01350 0.12 +1.2 127,071 + PGA1_c01350 0.12 +0.8 127,076 + PGA1_c01350 0.12 -0.8 127,076 + PGA1_c01350 0.12 -0.7 127,079 - PGA1_c01350 0.13 -0.7 127,079 - PGA1_c01350 0.13 +0.5 127,084 - PGA1_c01350 0.13 -0.3 127,084 - PGA1_c01350 0.13 +0.1 127,084 - PGA1_c01350 0.13 +0.3 127,192 + PGA1_c01350 0.18 -0.1 127,264 - PGA1_c01350 0.21 -1.1 127,280 + PGA1_c01350 0.22 +1.2 127,281 + PGA1_c01350 0.22 -0.1 127,281 + PGA1_c01350 0.22 -0.1 127,289 - PGA1_c01350 0.22 +0.8 127,289 - PGA1_c01350 0.22 -0.5 127,289 - PGA1_c01350 0.22 -0.8 127,289 - PGA1_c01350 0.22 -0.9 127,315 - PGA1_c01350 0.23 -0.8 127,326 + PGA1_c01350 0.24 +0.0
Or see this region's nucleotide sequence