Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26940 and BWI76_RS26945 are separated by 108 nucleotides BWI76_RS26945 and BWI76_RS26950 are separated by 3 nucleotides BWI76_RS26950 and BWI76_RS26955 are separated by 101 nucleotides
BWI76_RS26940: BWI76_RS26940 - transcriptional regulator, at 5,588,562 to 5,589,578
_RS26940
BWI76_RS26945: BWI76_RS26945 - hypothetical protein, at 5,589,687 to 5,590,436
_RS26945
BWI76_RS26950: BWI76_RS26950 - 2-dehydro-3-deoxygluconokinase, at 5,590,440 to 5,591,378
_RS26950
BWI76_RS26955: BWI76_RS26955 - MFS transporter, at 5,591,480 to 5,592,760
_RS26955
Position (kb) 5590
5591
5592 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 5589.442 kb on + strand, within BWI76_RS26940 at 5589.450 kb on - strand, within BWI76_RS26940 at 5589.611 kb on + strand at 5589.687 kb on - strand at 5589.757 kb on + strand at 5589.821 kb on - strand, within BWI76_RS26945 at 5589.978 kb on - strand, within BWI76_RS26945 at 5590.209 kb on - strand, within BWI76_RS26945 at 5590.250 kb on + strand, within BWI76_RS26945 at 5590.263 kb on + strand, within BWI76_RS26945 at 5590.403 kb on - strand at 5590.562 kb on - strand, within BWI76_RS26950 at 5590.577 kb on + strand, within BWI76_RS26950 at 5590.588 kb on + strand, within BWI76_RS26950 at 5590.627 kb on + strand, within BWI76_RS26950 at 5590.676 kb on - strand, within BWI76_RS26950 at 5590.876 kb on - strand, within BWI76_RS26950 at 5591.035 kb on + strand, within BWI76_RS26950 at 5591.043 kb on - strand, within BWI76_RS26950 at 5591.346 kb on + strand at 5591.386 kb on - strand at 5591.546 kb on + strand at 5591.580 kb on - strand at 5591.624 kb on - strand, within BWI76_RS26955 at 5591.658 kb on - strand, within BWI76_RS26955 at 5591.720 kb on - strand, within BWI76_RS26955 at 5591.774 kb on + strand, within BWI76_RS26955 at 5591.811 kb on + strand, within BWI76_RS26955 at 5591.813 kb on - strand, within BWI76_RS26955 at 5591.893 kb on + strand, within BWI76_RS26955 at 5591.901 kb on - strand, within BWI76_RS26955 at 5591.940 kb on - strand, within BWI76_RS26955 at 5592.016 kb on + strand, within BWI76_RS26955 at 5592.033 kb on + strand, within BWI76_RS26955 at 5592.152 kb on + strand, within BWI76_RS26955 at 5592.182 kb on - strand, within BWI76_RS26955 at 5592.218 kb on - strand, within BWI76_RS26955 at 5592.226 kb on - strand, within BWI76_RS26955 at 5592.303 kb on - strand, within BWI76_RS26955 at 5592.351 kb on - strand, within BWI76_RS26955
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM remove 5,589,442 + BWI76_RS26940 0.87 -2.7 5,589,450 - BWI76_RS26940 0.87 -5.2 5,589,611 + -0.9 5,589,687 - +0.1 5,589,757 + +0.4 5,589,821 - BWI76_RS26945 0.18 -0.5 5,589,978 - BWI76_RS26945 0.39 +0.7 5,590,209 - BWI76_RS26945 0.70 -0.2 5,590,250 + BWI76_RS26945 0.75 -0.1 5,590,263 + BWI76_RS26945 0.77 -0.5 5,590,403 - -0.3 5,590,562 - BWI76_RS26950 0.13 +0.3 5,590,577 + BWI76_RS26950 0.15 -0.3 5,590,588 + BWI76_RS26950 0.16 +0.1 5,590,627 + BWI76_RS26950 0.20 -0.6 5,590,676 - BWI76_RS26950 0.25 -0.4 5,590,876 - BWI76_RS26950 0.46 -0.2 5,591,035 + BWI76_RS26950 0.63 -0.4 5,591,043 - BWI76_RS26950 0.64 -0.6 5,591,346 + -0.1 5,591,386 - -0.3 5,591,546 + -0.1 5,591,580 - -0.4 5,591,624 - BWI76_RS26955 0.11 +0.0 5,591,658 - BWI76_RS26955 0.14 -1.1 5,591,720 - BWI76_RS26955 0.19 -0.4 5,591,774 + BWI76_RS26955 0.23 +0.3 5,591,811 + BWI76_RS26955 0.26 +0.3 5,591,813 - BWI76_RS26955 0.26 -0.2 5,591,893 + BWI76_RS26955 0.32 -1.7 5,591,901 - BWI76_RS26955 0.33 +0.1 5,591,940 - BWI76_RS26955 0.36 -0.6 5,592,016 + BWI76_RS26955 0.42 -0.1 5,592,033 + BWI76_RS26955 0.43 -0.1 5,592,152 + BWI76_RS26955 0.52 -0.1 5,592,182 - BWI76_RS26955 0.55 -0.7 5,592,218 - BWI76_RS26955 0.58 +0.2 5,592,226 - BWI76_RS26955 0.58 +0.3 5,592,303 - BWI76_RS26955 0.64 -0.3 5,592,351 - BWI76_RS26955 0.68 -0.0
Or see this region's nucleotide sequence