Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26230 and BWI76_RS26235 are separated by 144 nucleotides BWI76_RS26235 and BWI76_RS26240 overlap by 1 nucleotides BWI76_RS26240 and BWI76_RS26245 are separated by 180 nucleotides
BWI76_RS26230: BWI76_RS26230 - ATP-dependent DNA helicase, at 5,429,338 to 5,431,437
_RS26230
BWI76_RS26235: BWI76_RS26235 - gluconate transporter, at 5,431,582 to 5,432,922
_RS26235
BWI76_RS26240: BWI76_RS26240 - gluconokinase, at 5,432,922 to 5,433,452
_RS26240
BWI76_RS26245: BWI76_RS26245 - transcriptional regulator, at 5,433,633 to 5,434,628
_RS26245
Position (kb) 5431
5432
5433 Strain fitness (log2 ratio) -1
0
1 at 5430.606 kb on + strand, within BWI76_RS26230 at 5430.610 kb on + strand, within BWI76_RS26230 at 5430.614 kb on - strand, within BWI76_RS26230 at 5430.693 kb on + strand, within BWI76_RS26230 at 5430.700 kb on + strand, within BWI76_RS26230 at 5430.887 kb on + strand, within BWI76_RS26230 at 5430.892 kb on + strand, within BWI76_RS26230 at 5430.988 kb on + strand, within BWI76_RS26230 at 5431.126 kb on - strand, within BWI76_RS26230 at 5431.368 kb on - strand at 5431.411 kb on + strand at 5431.411 kb on + strand at 5431.482 kb on + strand at 5431.576 kb on - strand at 5431.579 kb on + strand at 5431.587 kb on - strand at 5431.860 kb on + strand, within BWI76_RS26235 at 5431.911 kb on + strand, within BWI76_RS26235 at 5432.091 kb on - strand, within BWI76_RS26235 at 5432.294 kb on + strand, within BWI76_RS26235 at 5432.953 kb on - strand at 5433.773 kb on - strand, within BWI76_RS26245 at 5433.900 kb on - strand, within BWI76_RS26245
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM remove 5,430,606 + BWI76_RS26230 0.60 -0.4 5,430,610 + BWI76_RS26230 0.61 -0.3 5,430,614 - BWI76_RS26230 0.61 +0.1 5,430,693 + BWI76_RS26230 0.65 +0.3 5,430,700 + BWI76_RS26230 0.65 -0.7 5,430,887 + BWI76_RS26230 0.74 -0.6 5,430,892 + BWI76_RS26230 0.74 +0.0 5,430,988 + BWI76_RS26230 0.79 -0.0 5,431,126 - BWI76_RS26230 0.85 +0.0 5,431,368 - -0.1 5,431,411 + +0.1 5,431,411 + -0.8 5,431,482 + -0.1 5,431,576 - -0.6 5,431,579 + -0.0 5,431,587 - -0.1 5,431,860 + BWI76_RS26235 0.21 +0.4 5,431,911 + BWI76_RS26235 0.25 -0.2 5,432,091 - BWI76_RS26235 0.38 -0.1 5,432,294 + BWI76_RS26235 0.53 +1.3 5,432,953 - +0.4 5,433,773 - BWI76_RS26245 0.14 -1.1 5,433,900 - BWI76_RS26245 0.27 -0.5
Or see this region's nucleotide sequence