Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04100 and BWI76_RS04105 are separated by 217 nucleotides BWI76_RS04105 and BWI76_RS04110 are separated by 123 nucleotides BWI76_RS04110 and BWI76_RS04115 are separated by 120 nucleotides
BWI76_RS04100: BWI76_RS04100 - peptide chain release factor 3, at 843,057 to 844,646
_RS04100
BWI76_RS04105: BWI76_RS04105 - molecular chaperone OsmY, at 844,864 to 845,475
_RS04105
BWI76_RS04110: BWI76_RS04110 - DUF1328 domain-containing protein, at 845,599 to 845,760
_RS04110
BWI76_RS04115: BWI76_RS04115 - patatin family protein, at 845,881 to 846,954
_RS04115
Position (kb) 845
846 Strain fitness (log2 ratio) -2
-1
0
1
2 at 844.899 kb on - strand at 844.923 kb on - strand at 844.951 kb on + strand, within BWI76_RS04105 at 844.951 kb on + strand, within BWI76_RS04105 at 844.951 kb on + strand, within BWI76_RS04105 at 844.959 kb on - strand, within BWI76_RS04105 at 845.063 kb on - strand, within BWI76_RS04105 at 845.063 kb on - strand, within BWI76_RS04105 at 845.097 kb on + strand, within BWI76_RS04105 at 845.133 kb on - strand, within BWI76_RS04105 at 845.141 kb on + strand, within BWI76_RS04105 at 845.259 kb on + strand, within BWI76_RS04105 at 845.368 kb on - strand, within BWI76_RS04105 at 845.385 kb on - strand, within BWI76_RS04105 at 845.409 kb on + strand, within BWI76_RS04105 at 845.436 kb on - strand at 845.527 kb on + strand at 845.527 kb on + strand at 845.527 kb on + strand at 845.527 kb on - strand at 845.535 kb on - strand at 845.535 kb on - strand at 845.540 kb on - strand at 845.582 kb on + strand at 845.589 kb on + strand at 845.590 kb on - strand at 845.647 kb on + strand, within BWI76_RS04110 at 845.655 kb on - strand, within BWI76_RS04110 at 845.657 kb on + strand, within BWI76_RS04110 at 845.667 kb on + strand, within BWI76_RS04110 at 845.687 kb on - strand, within BWI76_RS04110 at 845.711 kb on + strand, within BWI76_RS04110 at 845.763 kb on - strand at 845.907 kb on + strand at 845.912 kb on + strand at 845.951 kb on + strand at 845.959 kb on - strand at 845.959 kb on - strand at 845.964 kb on - strand at 845.971 kb on + strand at 845.980 kb on - strand at 846.420 kb on - strand, within BWI76_RS04115 at 846.514 kb on + strand, within BWI76_RS04115 at 846.519 kb on + strand, within BWI76_RS04115 at 846.521 kb on + strand, within BWI76_RS04115 at 846.527 kb on - strand, within BWI76_RS04115 at 846.633 kb on - strand, within BWI76_RS04115 at 846.711 kb on - strand, within BWI76_RS04115 at 846.711 kb on - strand, within BWI76_RS04115 at 846.746 kb on - strand, within BWI76_RS04115
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM remove 844,899 - +0.8 844,923 - +0.0 844,951 + BWI76_RS04105 0.14 +0.0 844,951 + BWI76_RS04105 0.14 -0.2 844,951 + BWI76_RS04105 0.14 +0.5 844,959 - BWI76_RS04105 0.16 +0.1 845,063 - BWI76_RS04105 0.33 -0.0 845,063 - BWI76_RS04105 0.33 -0.1 845,097 + BWI76_RS04105 0.38 +0.6 845,133 - BWI76_RS04105 0.44 -0.0 845,141 + BWI76_RS04105 0.45 -0.2 845,259 + BWI76_RS04105 0.65 -0.3 845,368 - BWI76_RS04105 0.82 +1.2 845,385 - BWI76_RS04105 0.85 -0.1 845,409 + BWI76_RS04105 0.89 -0.3 845,436 - +0.1 845,527 + -0.1 845,527 + +0.8 845,527 + +0.3 845,527 - +0.4 845,535 - +0.0 845,535 - -2.1 845,540 - -0.1 845,582 + +0.1 845,589 + -1.4 845,590 - -0.1 845,647 + BWI76_RS04110 0.30 -0.3 845,655 - BWI76_RS04110 0.35 -0.0 845,657 + BWI76_RS04110 0.36 +0.5 845,667 + BWI76_RS04110 0.42 +0.6 845,687 - BWI76_RS04110 0.54 +1.1 845,711 + BWI76_RS04110 0.69 +0.3 845,763 - +0.3 845,907 + -0.2 845,912 + -0.4 845,951 + +0.5 845,959 - +0.1 845,959 - +0.2 845,964 - -0.0 845,971 + -0.2 845,980 - +0.7 846,420 - BWI76_RS04115 0.50 +0.1 846,514 + BWI76_RS04115 0.59 -0.2 846,519 + BWI76_RS04115 0.59 -0.5 846,521 + BWI76_RS04115 0.60 -0.3 846,527 - BWI76_RS04115 0.60 -0.6 846,633 - BWI76_RS04115 0.70 +2.0 846,711 - BWI76_RS04115 0.77 +0.5 846,711 - BWI76_RS04115 0.77 +0.5 846,746 - BWI76_RS04115 0.81 +0.5
Or see this region's nucleotide sequence