Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS14320

Experiment: MRS Time48hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS14315 and BBR_RS14320 are separated by 137 nucleotidesBBR_RS14320 and BBR_RS14325 are separated by 42 nucleotidesBBR_RS14325 and BBR_RS14330 are separated by 73 nucleotides BBR_RS14315: BBR_RS14315 - DNA polymerase I, at 986,052 to 988,907 _RS14315 BBR_RS14320: BBR_RS14320 - Nif3-like dinuclear metal center hexameric protein, at 989,045 to 989,965 _RS14320 BBR_RS14325: BBR_RS14325 - NUDIX hydrolase, at 990,008 to 990,682 _RS14325 BBR_RS14330: BBR_RS14330 - glycogen debranching enzyme GlgX, at 990,756 to 992,867 _RS14330 Position (kb) 989 990Strain fitness (log2 ratio) -2 -1 0 1 2 3at 988.063 kb on + strand, within BBR_RS14315at 988.072 kb on + strand, within BBR_RS14315at 988.123 kb on + strand, within BBR_RS14315at 988.210 kb on + strand, within BBR_RS14315at 988.213 kb on - strand, within BBR_RS14315at 988.299 kb on - strand, within BBR_RS14315at 988.337 kb on + strand, within BBR_RS14315at 988.399 kb on + strand, within BBR_RS14315at 988.399 kb on + strand, within BBR_RS14315at 988.416 kb on + strand, within BBR_RS14315at 988.443 kb on + strand, within BBR_RS14315at 988.445 kb on + strand, within BBR_RS14315at 988.509 kb on + strand, within BBR_RS14315at 988.509 kb on + strand, within BBR_RS14315at 988.519 kb on + strand, within BBR_RS14315at 988.632 kb on + strandat 988.667 kb on - strandat 988.814 kb on + strandat 988.991 kb on + strandat 989.034 kb on - strandat 989.035 kb on + strandat 989.043 kb on - strandat 989.080 kb on - strandat 989.115 kb on - strandat 989.183 kb on + strand, within BBR_RS14320at 989.205 kb on - strand, within BBR_RS14320at 989.235 kb on + strand, within BBR_RS14320at 989.307 kb on + strand, within BBR_RS14320at 989.315 kb on - strand, within BBR_RS14320at 989.322 kb on + strand, within BBR_RS14320at 989.370 kb on + strand, within BBR_RS14320at 989.375 kb on + strand, within BBR_RS14320at 989.378 kb on - strand, within BBR_RS14320at 989.380 kb on + strand, within BBR_RS14320at 989.400 kb on + strand, within BBR_RS14320at 989.426 kb on - strand, within BBR_RS14320at 989.455 kb on + strand, within BBR_RS14320at 989.539 kb on + strand, within BBR_RS14320at 989.551 kb on - strand, within BBR_RS14320at 989.601 kb on + strand, within BBR_RS14320at 989.645 kb on - strand, within BBR_RS14320at 989.666 kb on + strand, within BBR_RS14320at 989.689 kb on + strand, within BBR_RS14320at 989.745 kb on + strand, within BBR_RS14320at 989.753 kb on - strand, within BBR_RS14320at 989.757 kb on + strand, within BBR_RS14320at 989.759 kb on - strand, within BBR_RS14320at 989.791 kb on - strand, within BBR_RS14320at 989.811 kb on - strand, within BBR_RS14320at 989.850 kb on + strand, within BBR_RS14320at 989.850 kb on + strand, within BBR_RS14320at 989.881 kb on + strandat 989.941 kb on + strandat 989.941 kb on + strandat 989.941 kb on + strandat 989.949 kb on - strandat 989.954 kb on + strandat 989.954 kb on + strandat 989.963 kb on - strandat 989.978 kb on - strandat 989.980 kb on - strandat 990.008 kb on - strandat 990.084 kb on + strand, within BBR_RS14325at 990.114 kb on + strand, within BBR_RS14325at 990.114 kb on + strand, within BBR_RS14325at 990.165 kb on - strand, within BBR_RS14325at 990.204 kb on + strand, within BBR_RS14325at 990.260 kb on + strand, within BBR_RS14325at 990.260 kb on + strand, within BBR_RS14325at 990.269 kb on - strand, within BBR_RS14325at 990.275 kb on - strand, within BBR_RS14325at 990.301 kb on - strand, within BBR_RS14325at 990.309 kb on + strand, within BBR_RS14325at 990.372 kb on + strand, within BBR_RS14325at 990.411 kb on - strand, within BBR_RS14325at 990.444 kb on + strand, within BBR_RS14325at 990.475 kb on + strand, within BBR_RS14325at 990.475 kb on + strand, within BBR_RS14325at 990.489 kb on + strand, within BBR_RS14325at 990.561 kb on - strand, within BBR_RS14325at 990.943 kb on - strandat 990.960 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MRS Time48hr
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988,063 + BBR_RS14315 0.70 +0.4
988,072 + BBR_RS14315 0.71 -0.2
988,123 + BBR_RS14315 0.73 -0.2
988,210 + BBR_RS14315 0.76 -0.6
988,213 - BBR_RS14315 0.76 +1.4
988,299 - BBR_RS14315 0.79 +0.4
988,337 + BBR_RS14315 0.80 +1.4
988,399 + BBR_RS14315 0.82 -2.6
988,399 + BBR_RS14315 0.82 +1.4
988,416 + BBR_RS14315 0.83 +0.8
988,443 + BBR_RS14315 0.84 +1.4
988,445 + BBR_RS14315 0.84 -0.2
988,509 + BBR_RS14315 0.86 +3.2
988,509 + BBR_RS14315 0.86 -0.4
988,519 + BBR_RS14315 0.86 +0.4
988,632 + +0.4
988,667 - -2.1
988,814 + -2.1
988,991 + +1.4
989,034 - -0.3
989,035 + -1.2
989,043 - +2.4
989,080 - +2.4
989,115 - -2.1
989,183 + BBR_RS14320 0.15 +2.4
989,205 - BBR_RS14320 0.17 +0.4
989,235 + BBR_RS14320 0.21 -1.1
989,307 + BBR_RS14320 0.28 +0.4
989,315 - BBR_RS14320 0.29 +1.4
989,322 + BBR_RS14320 0.30 -0.6
989,370 + BBR_RS14320 0.35 +3.0
989,375 + BBR_RS14320 0.36 +2.4
989,378 - BBR_RS14320 0.36 -0.9
989,380 + BBR_RS14320 0.36 +1.1
989,400 + BBR_RS14320 0.39 -2.7
989,426 - BBR_RS14320 0.41 +1.4
989,455 + BBR_RS14320 0.45 +0.4
989,539 + BBR_RS14320 0.54 -0.8
989,551 - BBR_RS14320 0.55 +2.4
989,601 + BBR_RS14320 0.60 +3.4
989,645 - BBR_RS14320 0.65 +0.8
989,666 + BBR_RS14320 0.67 -1.2
989,689 + BBR_RS14320 0.70 +0.2
989,745 + BBR_RS14320 0.76 +1.6
989,753 - BBR_RS14320 0.77 +0.4
989,757 + BBR_RS14320 0.77 +2.4
989,759 - BBR_RS14320 0.78 +1.4
989,791 - BBR_RS14320 0.81 +1.4
989,811 - BBR_RS14320 0.83 -0.5
989,850 + BBR_RS14320 0.87 -0.6
989,850 + BBR_RS14320 0.87 -0.6
989,881 + -1.8
989,941 + +1.4
989,941 + +1.1
989,941 + -0.1
989,949 - +1.4
989,954 + -0.6
989,954 + -1.3
989,963 - -1.0
989,978 - -0.6
989,980 - +0.4
990,008 - +1.4
990,084 + BBR_RS14325 0.11 +0.4
990,114 + BBR_RS14325 0.16 -0.2
990,114 + BBR_RS14325 0.16 -1.6
990,165 - BBR_RS14325 0.23 +1.4
990,204 + BBR_RS14325 0.29 -1.2
990,260 + BBR_RS14325 0.37 +0.4
990,260 + BBR_RS14325 0.37 +0.4
990,269 - BBR_RS14325 0.39 +1.4
990,275 - BBR_RS14325 0.40 +1.8
990,301 - BBR_RS14325 0.43 +0.4
990,309 + BBR_RS14325 0.45 +0.2
990,372 + BBR_RS14325 0.54 +1.4
990,411 - BBR_RS14325 0.60 -2.1
990,444 + BBR_RS14325 0.65 +1.4
990,475 + BBR_RS14325 0.69 -0.2
990,475 + BBR_RS14325 0.69 -0.6
990,489 + BBR_RS14325 0.71 +1.4
990,561 - BBR_RS14325 0.82 +1.4
990,943 - +0.4
990,960 + +0.4

Or see this region's nucleotide sequence