Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS14050

Experiment: MRS Time48hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS14040 and BBR_RS14045 are separated by 289 nucleotidesBBR_RS14045 and BBR_RS14050 are separated by 21 nucleotidesBBR_RS14050 and BBR_RS14055 are separated by 6 nucleotidesBBR_RS14055 and BBR_RS14060 are separated by 2 nucleotides BBR_RS14040: BBR_RS14040 - GNAT family N-acetyltransferase, at 926,648 to 927,123 _RS14040 BBR_RS14045: BBR_RS14045 - GntR family transcriptional regulator, at 927,413 to 927,787 _RS14045 BBR_RS14050: BBR_RS14050 - ABC transporter ATP-binding protein, at 927,809 to 928,729 _RS14050 BBR_RS14055: BBR_RS14055 - ABC-2 transporter permease, at 928,736 to 929,449 _RS14055 BBR_RS14060: BBR_RS14060 - ABC transporter, at 929,452 to 930,165 _RS14060 Position (kb) 927 928 929Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 926.814 kb on - strand, within BBR_RS14040at 926.814 kb on - strand, within BBR_RS14040at 926.852 kb on + strand, within BBR_RS14040at 926.977 kb on + strand, within BBR_RS14040at 926.987 kb on + strand, within BBR_RS14040at 926.987 kb on + strand, within BBR_RS14040at 926.992 kb on + strand, within BBR_RS14040at 926.995 kb on - strand, within BBR_RS14040at 927.019 kb on + strand, within BBR_RS14040at 927.031 kb on + strand, within BBR_RS14040at 927.058 kb on + strand, within BBR_RS14040at 927.058 kb on + strand, within BBR_RS14040at 927.192 kb on + strandat 927.197 kb on + strandat 927.223 kb on - strandat 927.229 kb on + strandat 927.237 kb on - strandat 927.237 kb on - strandat 927.412 kb on + strandat 927.437 kb on - strandat 927.438 kb on + strandat 927.487 kb on + strand, within BBR_RS14045at 927.555 kb on + strand, within BBR_RS14045at 927.555 kb on + strand, within BBR_RS14045at 927.608 kb on + strand, within BBR_RS14045at 927.673 kb on + strand, within BBR_RS14045at 927.673 kb on + strand, within BBR_RS14045at 927.746 kb on + strand, within BBR_RS14045at 927.746 kb on + strand, within BBR_RS14045at 927.747 kb on + strand, within BBR_RS14045at 927.747 kb on + strand, within BBR_RS14045at 927.747 kb on + strand, within BBR_RS14045at 927.781 kb on + strandat 927.858 kb on + strandat 927.868 kb on + strandat 927.899 kb on + strandat 927.909 kb on + strand, within BBR_RS14050at 927.924 kb on - strand, within BBR_RS14050at 927.957 kb on + strand, within BBR_RS14050at 927.967 kb on + strand, within BBR_RS14050at 927.967 kb on + strand, within BBR_RS14050at 927.984 kb on + strand, within BBR_RS14050at 928.033 kb on - strand, within BBR_RS14050at 928.082 kb on - strand, within BBR_RS14050at 928.102 kb on - strand, within BBR_RS14050at 928.109 kb on + strand, within BBR_RS14050at 928.131 kb on - strand, within BBR_RS14050at 928.146 kb on - strand, within BBR_RS14050at 928.164 kb on + strand, within BBR_RS14050at 928.185 kb on + strand, within BBR_RS14050at 928.185 kb on + strand, within BBR_RS14050at 928.185 kb on + strand, within BBR_RS14050at 928.193 kb on - strand, within BBR_RS14050at 928.298 kb on + strand, within BBR_RS14050at 928.328 kb on - strand, within BBR_RS14050at 928.376 kb on - strand, within BBR_RS14050at 928.386 kb on + strand, within BBR_RS14050at 928.386 kb on + strand, within BBR_RS14050at 928.396 kb on + strand, within BBR_RS14050at 928.396 kb on + strand, within BBR_RS14050at 928.404 kb on - strand, within BBR_RS14050at 928.448 kb on - strand, within BBR_RS14050at 928.468 kb on + strand, within BBR_RS14050at 928.468 kb on + strand, within BBR_RS14050at 928.476 kb on - strand, within BBR_RS14050at 928.513 kb on + strand, within BBR_RS14050at 928.566 kb on + strand, within BBR_RS14050at 928.569 kb on + strand, within BBR_RS14050at 928.605 kb on + strand, within BBR_RS14050at 928.614 kb on + strand, within BBR_RS14050at 928.665 kb on + strandat 928.753 kb on - strandat 928.807 kb on - strandat 928.843 kb on + strand, within BBR_RS14055at 928.850 kb on + strand, within BBR_RS14055at 928.882 kb on + strand, within BBR_RS14055at 928.896 kb on + strand, within BBR_RS14055at 928.903 kb on - strand, within BBR_RS14055at 928.918 kb on + strand, within BBR_RS14055at 928.936 kb on - strand, within BBR_RS14055at 929.006 kb on - strand, within BBR_RS14055at 929.146 kb on - strand, within BBR_RS14055at 929.205 kb on - strand, within BBR_RS14055at 929.269 kb on + strand, within BBR_RS14055at 929.303 kb on + strand, within BBR_RS14055at 929.310 kb on + strand, within BBR_RS14055at 929.315 kb on + strand, within BBR_RS14055at 929.323 kb on - strand, within BBR_RS14055at 929.473 kb on + strandat 929.503 kb on + strandat 929.503 kb on + strandat 929.503 kb on + strandat 929.599 kb on + strand, within BBR_RS14060at 929.599 kb on + strand, within BBR_RS14060at 929.606 kb on + strand, within BBR_RS14060at 929.606 kb on + strand, within BBR_RS14060at 929.611 kb on + strand, within BBR_RS14060at 929.611 kb on + strand, within BBR_RS14060at 929.624 kb on - strand, within BBR_RS14060at 929.633 kb on - strand, within BBR_RS14060at 929.662 kb on - strand, within BBR_RS14060at 929.669 kb on + strand, within BBR_RS14060at 929.697 kb on + strand, within BBR_RS14060at 929.697 kb on + strand, within BBR_RS14060at 929.697 kb on + strand, within BBR_RS14060at 929.697 kb on + strand, within BBR_RS14060at 929.697 kb on + strand, within BBR_RS14060at 929.697 kb on + strand, within BBR_RS14060at 929.698 kb on - strand, within BBR_RS14060at 929.705 kb on - strand, within BBR_RS14060

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Per-strain Table

Position Strand Gene LocusTag Fraction MRS Time48hr
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926,814 - BBR_RS14040 0.35 -0.9
926,814 - BBR_RS14040 0.35 -0.2
926,852 + BBR_RS14040 0.43 +2.1
926,977 + BBR_RS14040 0.69 +1.4
926,987 + BBR_RS14040 0.71 -2.5
926,987 + BBR_RS14040 0.71 +1.4
926,992 + BBR_RS14040 0.72 -1.8
926,995 - BBR_RS14040 0.73 +1.4
927,019 + BBR_RS14040 0.78 +1.4
927,031 + BBR_RS14040 0.80 -0.6
927,058 + BBR_RS14040 0.86 -0.4
927,058 + BBR_RS14040 0.86 -0.6
927,192 + +0.8
927,197 + +1.4
927,223 - +2.4
927,229 + -0.6
927,237 - +4.4
927,237 - +1.4
927,412 + +1.4
927,437 - -0.0
927,438 + -1.6
927,487 + BBR_RS14045 0.20 -2.4
927,555 + BBR_RS14045 0.38 +1.4
927,555 + BBR_RS14045 0.38 +2.0
927,608 + BBR_RS14045 0.52 +0.1
927,673 + BBR_RS14045 0.69 +0.4
927,673 + BBR_RS14045 0.69 +1.4
927,746 + BBR_RS14045 0.89 +3.0
927,746 + BBR_RS14045 0.89 +1.4
927,747 + BBR_RS14045 0.89 +0.4
927,747 + BBR_RS14045 0.89 +1.4
927,747 + BBR_RS14045 0.89 +4.0
927,781 + +1.4
927,858 + +1.4
927,868 + -2.5
927,899 + -1.2
927,909 + BBR_RS14050 0.11 +1.4
927,924 - BBR_RS14050 0.12 +0.4
927,957 + BBR_RS14050 0.16 +1.4
927,967 + BBR_RS14050 0.17 -1.8
927,967 + BBR_RS14050 0.17 +1.2
927,984 + BBR_RS14050 0.19 -2.2
928,033 - BBR_RS14050 0.24 -2.3
928,082 - BBR_RS14050 0.30 -1.2
928,102 - BBR_RS14050 0.32 +1.4
928,109 + BBR_RS14050 0.33 +1.4
928,131 - BBR_RS14050 0.35 -0.1
928,146 - BBR_RS14050 0.37 -0.2
928,164 + BBR_RS14050 0.39 -0.2
928,185 + BBR_RS14050 0.41 +0.2
928,185 + BBR_RS14050 0.41 +0.4
928,185 + BBR_RS14050 0.41 +0.4
928,193 - BBR_RS14050 0.42 -0.2
928,298 + BBR_RS14050 0.53 +0.4
928,328 - BBR_RS14050 0.56 +0.9
928,376 - BBR_RS14050 0.62 +1.4
928,386 + BBR_RS14050 0.63 +1.4
928,386 + BBR_RS14050 0.63 -1.9
928,396 + BBR_RS14050 0.64 +1.4
928,396 + BBR_RS14050 0.64 +1.4
928,404 - BBR_RS14050 0.65 +1.4
928,448 - BBR_RS14050 0.69 +1.4
928,468 + BBR_RS14050 0.72 -0.9
928,468 + BBR_RS14050 0.72 -0.8
928,476 - BBR_RS14050 0.72 +0.4
928,513 + BBR_RS14050 0.76 +1.4
928,566 + BBR_RS14050 0.82 -1.5
928,569 + BBR_RS14050 0.83 +1.4
928,605 + BBR_RS14050 0.86 +1.6
928,614 + BBR_RS14050 0.87 +0.9
928,665 + +1.4
928,753 - +0.8
928,807 - +1.4
928,843 + BBR_RS14055 0.15 +1.4
928,850 + BBR_RS14055 0.16 -1.9
928,882 + BBR_RS14055 0.20 +1.4
928,896 + BBR_RS14055 0.22 -1.2
928,903 - BBR_RS14055 0.23 +0.1
928,918 + BBR_RS14055 0.25 +1.4
928,936 - BBR_RS14055 0.28 +0.4
929,006 - BBR_RS14055 0.38 +0.4
929,146 - BBR_RS14055 0.57 +1.4
929,205 - BBR_RS14055 0.66 +1.4
929,269 + BBR_RS14055 0.75 +3.7
929,303 + BBR_RS14055 0.79 -0.8
929,310 + BBR_RS14055 0.80 +1.2
929,315 + BBR_RS14055 0.81 -2.1
929,323 - BBR_RS14055 0.82 +0.4
929,473 + -0.2
929,503 + +0.8
929,503 + +1.4
929,503 + -1.2
929,599 + BBR_RS14060 0.21 +2.0
929,599 + BBR_RS14060 0.21 +2.4
929,606 + BBR_RS14060 0.22 +2.4
929,606 + BBR_RS14060 0.22 -0.9
929,611 + BBR_RS14060 0.22 -0.4
929,611 + BBR_RS14060 0.22 +2.4
929,624 - BBR_RS14060 0.24 -0.9
929,633 - BBR_RS14060 0.25 +2.4
929,662 - BBR_RS14060 0.29 +1.4
929,669 + BBR_RS14060 0.30 -0.9
929,697 + BBR_RS14060 0.34 +1.4
929,697 + BBR_RS14060 0.34 +1.4
929,697 + BBR_RS14060 0.34 +1.5
929,697 + BBR_RS14060 0.34 -0.2
929,697 + BBR_RS14060 0.34 +1.4
929,697 + BBR_RS14060 0.34 -1.2
929,698 - BBR_RS14060 0.34 -1.4
929,705 - BBR_RS14060 0.35 +2.4

Or see this region's nucleotide sequence