Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13325

Experiment: MRS Time48hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13310 and BBR_RS13315 overlap by 4 nucleotidesBBR_RS13315 and BBR_RS13320 are separated by 5 nucleotidesBBR_RS13320 and BBR_RS13325 overlap by 9 nucleotidesBBR_RS13325 and BBR_RS13330 are separated by 77 nucleotidesBBR_RS13330 and BBR_RS13335 are separated by 348 nucleotides BBR_RS13310: BBR_RS13310 - hypothetical protein, at 760,756 to 761,466 _RS13310 BBR_RS13315: BBR_RS13315 - hypothetical protein, at 761,463 to 761,882 _RS13315 BBR_RS13320: BBR_RS13320 - ABC transporter ATP-binding protein, at 761,888 to 762,343 _RS13320 BBR_RS13325: BBR_RS13325 - hypothetical protein, at 762,335 to 762,637 _RS13325 BBR_RS13330: BBR_RS13330 - hypothetical protein, at 762,715 to 763,062 _RS13330 BBR_RS13335: BBR_RS13335 - transcriptional repressor, at 763,411 to 763,911 _RS13335 Position (kb) 762 763Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 761.336 kb on - strand, within BBR_RS13310at 761.338 kb on - strand, within BBR_RS13310at 761.363 kb on + strand, within BBR_RS13310at 761.377 kb on + strand, within BBR_RS13310at 761.421 kb on + strandat 761.453 kb on + strandat 761.458 kb on + strandat 761.459 kb on + strandat 761.461 kb on - strandat 761.468 kb on + strandat 761.509 kb on + strand, within BBR_RS13315at 761.522 kb on - strand, within BBR_RS13315at 761.527 kb on - strand, within BBR_RS13315at 761.527 kb on - strand, within BBR_RS13315at 761.532 kb on + strand, within BBR_RS13315at 761.551 kb on + strand, within BBR_RS13315at 761.569 kb on - strand, within BBR_RS13315at 761.569 kb on - strand, within BBR_RS13315at 761.668 kb on + strand, within BBR_RS13315at 761.670 kb on - strand, within BBR_RS13315at 761.674 kb on + strand, within BBR_RS13315at 761.702 kb on - strand, within BBR_RS13315at 761.702 kb on - strand, within BBR_RS13315at 761.745 kb on + strand, within BBR_RS13315at 761.768 kb on + strand, within BBR_RS13315at 761.791 kb on - strand, within BBR_RS13315at 761.791 kb on - strand, within BBR_RS13315at 761.791 kb on - strand, within BBR_RS13315at 761.793 kb on - strand, within BBR_RS13315at 761.793 kb on - strand, within BBR_RS13315at 761.822 kb on - strand, within BBR_RS13315at 761.839 kb on + strand, within BBR_RS13315at 761.845 kb on + strandat 761.847 kb on - strandat 761.847 kb on - strandat 761.859 kb on + strandat 761.892 kb on - strandat 761.901 kb on + strandat 762.018 kb on + strand, within BBR_RS13320at 762.036 kb on + strand, within BBR_RS13320at 762.095 kb on - strand, within BBR_RS13320at 762.168 kb on + strand, within BBR_RS13320at 762.176 kb on - strand, within BBR_RS13320at 762.180 kb on + strand, within BBR_RS13320at 762.200 kb on + strand, within BBR_RS13320at 762.202 kb on + strand, within BBR_RS13320at 762.210 kb on - strand, within BBR_RS13320at 762.210 kb on - strand, within BBR_RS13320at 762.215 kb on - strand, within BBR_RS13320at 762.273 kb on + strand, within BBR_RS13320at 762.326 kb on + strandat 762.337 kb on + strandat 762.371 kb on + strand, within BBR_RS13325at 762.371 kb on + strand, within BBR_RS13325at 762.379 kb on - strand, within BBR_RS13325at 762.398 kb on - strand, within BBR_RS13325at 762.411 kb on - strand, within BBR_RS13325at 762.412 kb on + strand, within BBR_RS13325at 762.412 kb on + strand, within BBR_RS13325at 762.420 kb on - strand, within BBR_RS13325at 762.470 kb on - strand, within BBR_RS13325at 762.475 kb on - strand, within BBR_RS13325at 762.514 kb on + strand, within BBR_RS13325at 762.671 kb on + strandat 762.672 kb on + strandat 762.680 kb on + strandat 762.726 kb on + strandat 762.731 kb on + strandat 762.739 kb on - strandat 762.760 kb on - strand, within BBR_RS13330at 762.811 kb on + strand, within BBR_RS13330at 762.821 kb on + strand, within BBR_RS13330at 762.846 kb on + strand, within BBR_RS13330at 762.851 kb on + strand, within BBR_RS13330at 762.865 kb on - strand, within BBR_RS13330at 762.872 kb on + strand, within BBR_RS13330at 762.880 kb on - strand, within BBR_RS13330at 762.907 kb on - strand, within BBR_RS13330at 762.960 kb on - strand, within BBR_RS13330at 762.974 kb on + strand, within BBR_RS13330at 763.007 kb on - strand, within BBR_RS13330at 763.049 kb on - strandat 763.105 kb on - strandat 763.105 kb on - strandat 763.222 kb on + strandat 763.234 kb on - strandat 763.236 kb on - strandat 763.236 kb on - strandat 763.236 kb on - strandat 763.321 kb on + strandat 763.334 kb on + strandat 763.394 kb on - strandat 763.403 kb on - strandat 763.403 kb on - strandat 763.405 kb on + strandat 763.444 kb on - strandat 763.450 kb on + strandat 763.457 kb on + strandat 763.482 kb on - strand, within BBR_RS13335at 763.525 kb on - strand, within BBR_RS13335at 763.559 kb on + strand, within BBR_RS13335at 763.575 kb on - strand, within BBR_RS13335at 763.576 kb on - strand, within BBR_RS13335

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Per-strain Table

Position Strand Gene LocusTag Fraction MRS Time48hr
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761,336 - BBR_RS13310 0.82 +1.3
761,338 - BBR_RS13310 0.82 +1.3
761,363 + BBR_RS13310 0.85 -1.7
761,377 + BBR_RS13310 0.87 -0.7
761,421 + -0.3
761,453 + -0.5
761,458 + +0.1
761,459 + +0.8
761,461 - -0.2
761,468 + -1.8
761,509 + BBR_RS13315 0.11 -0.6
761,522 - BBR_RS13315 0.14 -0.3
761,527 - BBR_RS13315 0.15 +1.3
761,527 - BBR_RS13315 0.15 +0.5
761,532 + BBR_RS13315 0.16 +0.1
761,551 + BBR_RS13315 0.21 +0.3
761,569 - BBR_RS13315 0.25 +1.3
761,569 - BBR_RS13315 0.25 +3.7
761,668 + BBR_RS13315 0.49 -1.0
761,670 - BBR_RS13315 0.49 -0.9
761,674 + BBR_RS13315 0.50 -1.7
761,702 - BBR_RS13315 0.57 -2.0
761,702 - BBR_RS13315 0.57 -0.3
761,745 + BBR_RS13315 0.67 -2.9
761,768 + BBR_RS13315 0.73 -0.3
761,791 - BBR_RS13315 0.78 -3.2
761,791 - BBR_RS13315 0.78 +0.3
761,791 - BBR_RS13315 0.78 +2.1
761,793 - BBR_RS13315 0.79 -0.5
761,793 - BBR_RS13315 0.79 -0.3
761,822 - BBR_RS13315 0.85 -1.5
761,839 + BBR_RS13315 0.90 -0.7
761,845 + +0.3
761,847 - +1.3
761,847 - +1.3
761,859 + +0.3
761,892 - -1.7
761,901 + +1.3
762,018 + BBR_RS13320 0.29 -2.6
762,036 + BBR_RS13320 0.32 +2.7
762,095 - BBR_RS13320 0.45 +1.3
762,168 + BBR_RS13320 0.61 +0.3
762,176 - BBR_RS13320 0.63 -0.5
762,180 + BBR_RS13320 0.64 +0.5
762,200 + BBR_RS13320 0.68 -0.3
762,202 + BBR_RS13320 0.69 +0.9
762,210 - BBR_RS13320 0.71 +0.7
762,210 - BBR_RS13320 0.71 +2.3
762,215 - BBR_RS13320 0.72 +1.3
762,273 + BBR_RS13320 0.84 +0.3
762,326 + -0.2
762,337 + +1.1
762,371 + BBR_RS13325 0.12 -0.2
762,371 + BBR_RS13325 0.12 -1.7
762,379 - BBR_RS13325 0.15 +1.3
762,398 - BBR_RS13325 0.21 -1.2
762,411 - BBR_RS13325 0.25 +1.3
762,412 + BBR_RS13325 0.25 -1.7
762,412 + BBR_RS13325 0.25 -2.4
762,420 - BBR_RS13325 0.28 -1.1
762,470 - BBR_RS13325 0.45 -0.7
762,475 - BBR_RS13325 0.46 -0.2
762,514 + BBR_RS13325 0.59 +1.3
762,671 + -0.2
762,672 + +2.3
762,680 + -3.9
762,726 + +0.3
762,731 + +2.9
762,739 - +0.7
762,760 - BBR_RS13330 0.13 -1.5
762,811 + BBR_RS13330 0.28 -0.5
762,821 + BBR_RS13330 0.30 +1.3
762,846 + BBR_RS13330 0.38 -0.3
762,851 + BBR_RS13330 0.39 -1.6
762,865 - BBR_RS13330 0.43 -1.8
762,872 + BBR_RS13330 0.45 +1.3
762,880 - BBR_RS13330 0.47 +1.3
762,907 - BBR_RS13330 0.55 -2.6
762,960 - BBR_RS13330 0.70 +0.7
762,974 + BBR_RS13330 0.74 -1.0
763,007 - BBR_RS13330 0.84 -3.1
763,049 - -0.0
763,105 - +0.0
763,105 - +1.3
763,222 + -0.3
763,234 - -2.8
763,236 - +0.7
763,236 - +0.3
763,236 - +0.3
763,321 + +0.3
763,334 + +1.3
763,394 - -1.0
763,403 - +2.3
763,403 - -1.7
763,405 + -2.1
763,444 - -1.3
763,450 + +0.1
763,457 + -1.7
763,482 - BBR_RS13335 0.14 +0.3
763,525 - BBR_RS13335 0.23 -0.3
763,559 + BBR_RS13335 0.30 -2.8
763,575 - BBR_RS13335 0.33 -1.6
763,576 - BBR_RS13335 0.33 -0.7

Or see this region's nucleotide sequence