Experiment: 10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30115 and AO356_30120 are separated by 3 nucleotides AO356_30120 and AO356_30125 are separated by 591 nucleotides
AO356_30115: AO356_30115 - aminomethyltransferase, at 7,027,229 to 7,030,126
_30115
AO356_30120: AO356_30120 - sarcosine oxidase, at 7,030,130 to 7,030,714
_30120
AO356_30125: AO356_30125 - xylose isomerase, at 7,031,306 to 7,032,142
_30125
Position (kb) 7030
7031 Strain fitness (log2 ratio) -1
0
1 at 7029.206 kb on + strand, within AO356_30115 at 7029.206 kb on + strand, within AO356_30115 at 7029.206 kb on + strand, within AO356_30115 at 7029.207 kb on - strand, within AO356_30115 at 7029.207 kb on - strand, within AO356_30115 at 7029.324 kb on - strand, within AO356_30115 at 7029.596 kb on + strand, within AO356_30115 at 7029.596 kb on + strand, within AO356_30115 at 7030.086 kb on + strand at 7030.124 kb on + strand at 7030.124 kb on + strand at 7030.124 kb on + strand at 7030.253 kb on + strand, within AO356_30120 at 7030.275 kb on + strand, within AO356_30120 at 7030.349 kb on + strand, within AO356_30120 at 7030.433 kb on + strand, within AO356_30120 at 7030.433 kb on + strand, within AO356_30120 at 7030.434 kb on - strand, within AO356_30120 at 7030.434 kb on - strand, within AO356_30120 at 7030.732 kb on - strand at 7030.732 kb on - strand at 7030.779 kb on + strand at 7030.780 kb on - strand at 7030.780 kb on - strand at 7030.780 kb on - strand at 7030.780 kb on - strand at 7030.880 kb on + strand at 7031.012 kb on - strand at 7031.077 kb on + strand at 7031.078 kb on - strand at 7031.108 kb on + strand at 7031.108 kb on + strand at 7031.108 kb on + strand at 7031.109 kb on - strand at 7031.119 kb on + strand at 7031.119 kb on + strand at 7031.119 kb on + strand at 7031.191 kb on + strand at 7031.202 kb on + strand at 7031.203 kb on - strand at 7031.256 kb on + strand at 7031.256 kb on + strand at 7031.256 kb on + strand at 7031.256 kb on + strand at 7031.259 kb on - strand at 7031.275 kb on + strand at 7031.303 kb on - strand at 7031.384 kb on + strand at 7031.416 kb on - strand, within AO356_30125 at 7031.570 kb on - strand, within AO356_30125 at 7031.570 kb on - strand, within AO356_30125 at 7031.570 kb on - strand, within AO356_30125 at 7031.607 kb on - strand, within AO356_30125 at 7031.607 kb on - strand, within AO356_30125 at 7031.607 kb on - strand, within AO356_30125 at 7031.673 kb on + strand, within AO356_30125 at 7031.673 kb on + strand, within AO356_30125 at 7031.674 kb on - strand, within AO356_30125
Per-strain Table
Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine remove 7,029,206 + AO356_30115 0.68 -0.1 7,029,206 + AO356_30115 0.68 +1.5 7,029,206 + AO356_30115 0.68 -0.0 7,029,207 - AO356_30115 0.68 +1.0 7,029,207 - AO356_30115 0.68 +0.8 7,029,324 - AO356_30115 0.72 +0.3 7,029,596 + AO356_30115 0.82 -0.0 7,029,596 + AO356_30115 0.82 -0.9 7,030,086 + -1.1 7,030,124 + -1.5 7,030,124 + -0.1 7,030,124 + -0.2 7,030,253 + AO356_30120 0.21 -1.0 7,030,275 + AO356_30120 0.25 -0.1 7,030,349 + AO356_30120 0.37 +0.5 7,030,433 + AO356_30120 0.52 +0.8 7,030,433 + AO356_30120 0.52 +0.4 7,030,434 - AO356_30120 0.52 +0.8 7,030,434 - AO356_30120 0.52 +0.4 7,030,732 - -0.3 7,030,732 - -0.8 7,030,779 + -0.3 7,030,780 - -0.1 7,030,780 - -0.5 7,030,780 - +0.4 7,030,780 - +0.1 7,030,880 + +0.1 7,031,012 - -0.0 7,031,077 + +0.1 7,031,078 - -0.5 7,031,108 + +0.5 7,031,108 + +0.1 7,031,108 + +0.5 7,031,109 - +0.1 7,031,119 + +0.4 7,031,119 + +0.5 7,031,119 + +0.4 7,031,191 + +1.1 7,031,202 + -1.1 7,031,203 - -0.3 7,031,256 + +1.5 7,031,256 + -0.0 7,031,256 + -0.1 7,031,256 + -0.3 7,031,259 - -0.2 7,031,275 + +0.2 7,031,303 - +0.5 7,031,384 + +0.1 7,031,416 - AO356_30125 0.13 +0.2 7,031,570 - AO356_30125 0.32 -0.6 7,031,570 - AO356_30125 0.32 -0.3 7,031,570 - AO356_30125 0.32 -0.3 7,031,607 - AO356_30125 0.36 -0.6 7,031,607 - AO356_30125 0.36 +0.8 7,031,607 - AO356_30125 0.36 -0.1 7,031,673 + AO356_30125 0.44 -0.1 7,031,673 + AO356_30125 0.44 +1.1 7,031,674 - AO356_30125 0.44 -0.2
Or see this region's nucleotide sequence