Experiment: 10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27530 and AO356_27535 are separated by 122 nucleotides AO356_27535 and AO356_27540 are separated by 1 nucleotides
AO356_27530: AO356_27530 - hypothetical protein, at 6,274,720 to 6,278,454
_27530
AO356_27535: AO356_27535 - channel protein TolC, at 6,278,577 to 6,279,884
_27535
AO356_27540: AO356_27540 - hemolysin secretion protein D, at 6,279,886 to 6,281,208
_27540
Position (kb)
6278
6279
6280 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6277.759 kb on - strand, within AO356_27530 at 6277.759 kb on - strand, within AO356_27530 at 6277.792 kb on - strand, within AO356_27530 at 6277.793 kb on + strand, within AO356_27530 at 6277.884 kb on - strand, within AO356_27530 at 6278.030 kb on + strand, within AO356_27530 at 6278.030 kb on + strand, within AO356_27530 at 6278.030 kb on + strand, within AO356_27530 at 6278.031 kb on - strand, within AO356_27530 at 6278.031 kb on - strand, within AO356_27530 at 6278.031 kb on - strand, within AO356_27530 at 6278.139 kb on + strand at 6278.289 kb on - strand at 6278.345 kb on + strand at 6278.346 kb on - strand at 6278.370 kb on - strand at 6278.370 kb on - strand at 6278.435 kb on + strand at 6278.502 kb on - strand at 6278.522 kb on + strand at 6278.523 kb on - strand at 6278.578 kb on + strand at 6278.579 kb on - strand at 6278.579 kb on - strand at 6278.649 kb on + strand at 6278.649 kb on + strand at 6278.649 kb on + strand at 6278.655 kb on + strand at 6278.655 kb on + strand at 6278.656 kb on - strand at 6278.674 kb on + strand at 6278.686 kb on + strand at 6278.854 kb on + strand, within AO356_27535 at 6279.413 kb on + strand, within AO356_27535 at 6279.532 kb on + strand, within AO356_27535 at 6279.559 kb on + strand, within AO356_27535 at 6279.560 kb on - strand, within AO356_27535 at 6279.560 kb on - strand, within AO356_27535 at 6279.592 kb on + strand, within AO356_27535 at 6279.592 kb on + strand, within AO356_27535 at 6279.593 kb on - strand, within AO356_27535 at 6279.635 kb on - strand, within AO356_27535 at 6279.821 kb on - strand at 6279.821 kb on - strand at 6279.821 kb on - strand at 6279.821 kb on - strand at 6280.056 kb on - strand, within AO356_27540 at 6280.056 kb on - strand, within AO356_27540 at 6280.389 kb on - strand, within AO356_27540 at 6280.580 kb on + strand, within AO356_27540 at 6280.625 kb on + strand, within AO356_27540 at 6280.626 kb on - strand, within AO356_27540
Per-strain Table
Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine remove 6,277,759 - AO356_27530 0.81 +0.3 6,277,759 - AO356_27530 0.81 +0.9 6,277,792 - AO356_27530 0.82 +1.1 6,277,793 + AO356_27530 0.82 +0.2 6,277,884 - AO356_27530 0.85 +0.7 6,278,030 + AO356_27530 0.89 +0.3 6,278,030 + AO356_27530 0.89 +0.7 6,278,030 + AO356_27530 0.89 +0.3 6,278,031 - AO356_27530 0.89 +0.6 6,278,031 - AO356_27530 0.89 +0.1 6,278,031 - AO356_27530 0.89 -1.3 6,278,139 + +0.7 6,278,289 - -0.8 6,278,345 + -0.6 6,278,346 - +1.8 6,278,370 - +1.1 6,278,370 - -0.0 6,278,435 + +0.1 6,278,502 - -0.2 6,278,522 + +0.9 6,278,523 - -0.1 6,278,578 + +0.2 6,278,579 - +0.2 6,278,579 - -0.4 6,278,649 + +0.7 6,278,649 + -0.1 6,278,649 + +0.4 6,278,655 + +0.2 6,278,655 + -0.7 6,278,656 - +0.2 6,278,674 + +0.2 6,278,686 + +0.3 6,278,854 + AO356_27535 0.21 +1.5 6,279,413 + AO356_27535 0.64 +2.2 6,279,532 + AO356_27535 0.73 +0.4 6,279,559 + AO356_27535 0.75 -0.5 6,279,560 - AO356_27535 0.75 -0.2 6,279,560 - AO356_27535 0.75 +1.7 6,279,592 + AO356_27535 0.78 -2.3 6,279,592 + AO356_27535 0.78 +0.7 6,279,593 - AO356_27535 0.78 +0.4 6,279,635 - AO356_27535 0.81 +2.3 6,279,821 - +0.7 6,279,821 - +0.1 6,279,821 - +0.0 6,279,821 - -0.5 6,280,056 - AO356_27540 0.13 +1.9 6,280,056 - AO356_27540 0.13 +0.6 6,280,389 - AO356_27540 0.38 +0.6 6,280,580 + AO356_27540 0.52 +0.1 6,280,625 + AO356_27540 0.56 -1.5 6,280,626 - AO356_27540 0.56 -0.7
Or see this region's nucleotide sequence