Experiment: 10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_05750 and AO356_05755 are separated by 130 nucleotides AO356_05755 and AO356_05760 overlap by 4 nucleotides AO356_05760 and AO356_05765 are separated by 67 nucleotides
AO356_05750: AO356_05750 - phage tail protein, at 1,279,856 to 1,281,430
_05750
AO356_05755: AO356_05755 - ArsR family transcriptional regulator, at 1,281,561 to 1,281,857
_05755
AO356_05760: AO356_05760 - phage tail protein, at 1,281,854 to 1,282,201
_05760
AO356_05765: AO356_05765 - phage tail protein, at 1,282,269 to 1,283,765
_05765
Position (kb) 1281
1282 Strain fitness (log2 ratio) -1
0
1
2 at 1280.996 kb on + strand, within AO356_05750 at 1281.247 kb on + strand, within AO356_05750 at 1281.248 kb on - strand, within AO356_05750 at 1281.289 kb on + strand at 1281.290 kb on - strand at 1281.410 kb on + strand at 1281.688 kb on + strand, within AO356_05755 at 1281.688 kb on + strand, within AO356_05755 at 1281.743 kb on - strand, within AO356_05755 at 1281.743 kb on - strand, within AO356_05755 at 1281.991 kb on + strand, within AO356_05760 at 1282.080 kb on + strand, within AO356_05760 at 1282.081 kb on - strand, within AO356_05760 at 1282.173 kb on + strand at 1282.173 kb on + strand at 1282.173 kb on + strand at 1282.174 kb on - strand at 1282.285 kb on + strand at 1282.285 kb on + strand at 1282.285 kb on + strand at 1282.286 kb on - strand at 1282.336 kb on + strand at 1282.336 kb on + strand at 1282.337 kb on - strand at 1282.337 kb on - strand at 1282.453 kb on + strand, within AO356_05765 at 1282.550 kb on - strand, within AO356_05765 at 1282.550 kb on - strand, within AO356_05765 at 1282.550 kb on - strand, within AO356_05765 at 1282.550 kb on - strand, within AO356_05765 at 1282.621 kb on + strand, within AO356_05765 at 1282.657 kb on + strand, within AO356_05765 at 1282.657 kb on + strand, within AO356_05765 at 1282.658 kb on - strand, within AO356_05765 at 1282.683 kb on + strand, within AO356_05765 at 1282.683 kb on + strand, within AO356_05765 at 1282.683 kb on + strand, within AO356_05765 at 1282.683 kb on + strand, within AO356_05765 at 1282.684 kb on - strand, within AO356_05765 at 1282.684 kb on - strand, within AO356_05765 at 1282.687 kb on + strand, within AO356_05765 at 1282.699 kb on + strand, within AO356_05765 at 1282.700 kb on - strand, within AO356_05765 at 1282.702 kb on + strand, within AO356_05765 at 1282.720 kb on + strand, within AO356_05765 at 1282.721 kb on - strand, within AO356_05765 at 1282.721 kb on - strand, within AO356_05765 at 1282.721 kb on - strand, within AO356_05765
Per-strain Table
Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine remove 1,280,996 + AO356_05750 0.72 +0.6 1,281,247 + AO356_05750 0.88 +1.2 1,281,248 - AO356_05750 0.88 -0.6 1,281,289 + -0.0 1,281,290 - +0.3 1,281,410 + -0.9 1,281,688 + AO356_05755 0.43 +0.0 1,281,688 + AO356_05755 0.43 -0.4 1,281,743 - AO356_05755 0.61 -0.3 1,281,743 - AO356_05755 0.61 +0.3 1,281,991 + AO356_05760 0.39 +0.1 1,282,080 + AO356_05760 0.65 +0.9 1,282,081 - AO356_05760 0.65 -0.2 1,282,173 + -0.4 1,282,173 + +0.1 1,282,173 + +0.7 1,282,174 - -0.0 1,282,285 + -0.2 1,282,285 + -0.6 1,282,285 + +0.1 1,282,286 - +0.8 1,282,336 + -0.3 1,282,336 + +0.3 1,282,337 - +0.2 1,282,337 - +1.2 1,282,453 + AO356_05765 0.12 -0.2 1,282,550 - AO356_05765 0.19 +0.4 1,282,550 - AO356_05765 0.19 -0.8 1,282,550 - AO356_05765 0.19 -1.4 1,282,550 - AO356_05765 0.19 +2.1 1,282,621 + AO356_05765 0.24 -0.7 1,282,657 + AO356_05765 0.26 -0.0 1,282,657 + AO356_05765 0.26 +0.4 1,282,658 - AO356_05765 0.26 +0.2 1,282,683 + AO356_05765 0.28 -0.0 1,282,683 + AO356_05765 0.28 -0.6 1,282,683 + AO356_05765 0.28 -0.9 1,282,683 + AO356_05765 0.28 +0.6 1,282,684 - AO356_05765 0.28 -0.2 1,282,684 - AO356_05765 0.28 +2.6 1,282,687 + AO356_05765 0.28 -0.2 1,282,699 + AO356_05765 0.29 +0.3 1,282,700 - AO356_05765 0.29 +0.6 1,282,702 + AO356_05765 0.29 -0.5 1,282,720 + AO356_05765 0.30 +0.5 1,282,721 - AO356_05765 0.30 -0.2 1,282,721 - AO356_05765 0.30 +0.4 1,282,721 - AO356_05765 0.30 +0.1
Or see this region's nucleotide sequence