Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2514

Experiment: BG11 with Chloride 3.90625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbtpA and argF are separated by 71 nucleotidesargF and Synpcc7942_2515 are separated by 33 nucleotides Synpcc7942_2513: btpA - Photosystem I assembly BtpA, at 2,592,285 to 2,593,169 btpA Synpcc7942_2514: argF - ornithine carbamoyltransferase, at 2,593,241 to 2,594,158 argF Synpcc7942_2515: Synpcc7942_2515 - putative DNA helicase, at 2,594,192 to 2,596,459 _2515 Position (kb) 2593 2594 2595Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2592.241 kb on + strandat 2592.253 kb on + strandat 2592.255 kb on + strandat 2592.260 kb on - strandat 2592.261 kb on - strandat 2593.203 kb on - strandat 2593.207 kb on + strandat 2594.153 kb on + strandat 2594.153 kb on + strandat 2594.153 kb on + strandat 2594.153 kb on + strandat 2594.153 kb on + strandat 2594.153 kb on + strandat 2594.161 kb on - strandat 2594.171 kb on - strandat 2594.176 kb on - strandat 2594.201 kb on + strandat 2594.209 kb on - strandat 2594.223 kb on + strandat 2594.239 kb on + strandat 2594.264 kb on - strandat 2594.272 kb on - strandat 2594.279 kb on + strandat 2594.291 kb on + strandat 2594.330 kb on + strandat 2594.330 kb on + strandat 2594.330 kb on + strandat 2594.330 kb on + strandat 2594.338 kb on - strandat 2594.338 kb on - strandat 2594.338 kb on - strandat 2594.348 kb on - strandat 2594.382 kb on + strandat 2594.382 kb on - strandat 2594.416 kb on + strandat 2594.423 kb on - strand, within Synpcc7942_2515at 2594.429 kb on + strand, within Synpcc7942_2515at 2594.441 kb on - strand, within Synpcc7942_2515at 2594.455 kb on + strand, within Synpcc7942_2515at 2594.455 kb on + strand, within Synpcc7942_2515at 2594.486 kb on - strand, within Synpcc7942_2515at 2594.493 kb on - strand, within Synpcc7942_2515at 2594.545 kb on - strand, within Synpcc7942_2515at 2594.570 kb on + strand, within Synpcc7942_2515at 2594.574 kb on + strand, within Synpcc7942_2515at 2594.607 kb on + strand, within Synpcc7942_2515at 2594.607 kb on + strandat 2594.615 kb on - strand, within Synpcc7942_2515at 2594.615 kb on - strand, within Synpcc7942_2515at 2594.617 kb on + strand, within Synpcc7942_2515at 2594.625 kb on - strand, within Synpcc7942_2515at 2594.635 kb on - strand, within Synpcc7942_2515at 2594.638 kb on + strand, within Synpcc7942_2515at 2594.666 kb on - strand, within Synpcc7942_2515at 2594.671 kb on - strand, within Synpcc7942_2515at 2594.671 kb on - strand, within Synpcc7942_2515at 2594.671 kb on - strand, within Synpcc7942_2515at 2594.671 kb on - strand, within Synpcc7942_2515at 2594.684 kb on - strand, within Synpcc7942_2515at 2594.729 kb on - strand, within Synpcc7942_2515at 2594.734 kb on - strand, within Synpcc7942_2515at 2594.795 kb on - strand, within Synpcc7942_2515at 2594.814 kb on + strand, within Synpcc7942_2515at 2594.831 kb on + strand, within Synpcc7942_2515at 2594.869 kb on + strand, within Synpcc7942_2515at 2594.904 kb on + strand, within Synpcc7942_2515at 2594.942 kb on + strand, within Synpcc7942_2515at 2594.952 kb on + strand, within Synpcc7942_2515at 2594.952 kb on + strand, within Synpcc7942_2515at 2594.952 kb on + strand, within Synpcc7942_2515at 2594.952 kb on + strand, within Synpcc7942_2515at 2594.952 kb on + strand, within Synpcc7942_2515at 2594.952 kb on + strand, within Synpcc7942_2515at 2594.960 kb on - strand, within Synpcc7942_2515at 2594.960 kb on - strand, within Synpcc7942_2515at 2594.970 kb on - strand, within Synpcc7942_2515at 2594.984 kb on + strand, within Synpcc7942_2515at 2594.987 kb on - strand, within Synpcc7942_2515at 2594.993 kb on + strand, within Synpcc7942_2515at 2595.001 kb on - strand, within Synpcc7942_2515at 2595.039 kb on + strand, within Synpcc7942_2515at 2595.039 kb on + strand, within Synpcc7942_2515at 2595.043 kb on + strand, within Synpcc7942_2515at 2595.074 kb on - strand, within Synpcc7942_2515at 2595.114 kb on - strandat 2595.137 kb on - strand, within Synpcc7942_2515at 2595.153 kb on + strand, within Synpcc7942_2515at 2595.155 kb on - strand, within Synpcc7942_2515

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11 with Chloride 3.90625 mM
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2,592,241 + -0.1
2,592,253 + -2.9
2,592,255 + -0.6
2,592,260 - -0.9
2,592,261 - +1.6
2,593,203 - -0.9
2,593,207 + +0.3
2,594,153 + -0.7
2,594,153 + -0.3
2,594,153 + -1.3
2,594,153 + +0.1
2,594,153 + -0.3
2,594,153 + -0.6
2,594,161 - +0.0
2,594,171 - +0.5
2,594,176 - -0.1
2,594,201 + -1.7
2,594,209 - -1.8
2,594,223 + +1.7
2,594,239 + -1.4
2,594,264 - -1.0
2,594,272 - +0.8
2,594,279 + -0.5
2,594,291 + +3.3
2,594,330 + -0.5
2,594,330 + +0.8
2,594,330 + +0.6
2,594,330 + -0.1
2,594,338 - +1.9
2,594,338 - -0.4
2,594,338 - -0.4
2,594,348 - +1.6
2,594,382 + +0.0
2,594,382 - +0.8
2,594,416 + -0.2
2,594,423 - Synpcc7942_2515 0.10 +0.1
2,594,429 + Synpcc7942_2515 0.10 -0.3
2,594,441 - Synpcc7942_2515 0.11 +0.5
2,594,455 + Synpcc7942_2515 0.12 -1.4
2,594,455 + Synpcc7942_2515 0.12 -1.1
2,594,486 - Synpcc7942_2515 0.13 -2.0
2,594,493 - Synpcc7942_2515 0.13 -0.5
2,594,545 - Synpcc7942_2515 0.16 -1.5
2,594,570 + Synpcc7942_2515 0.17 +0.6
2,594,574 + Synpcc7942_2515 0.17 +2.0
2,594,607 + Synpcc7942_2515 0.18 +0.0
2,594,607 + +0.8
2,594,615 - Synpcc7942_2515 0.19 -1.7
2,594,615 - Synpcc7942_2515 0.19 -1.3
2,594,617 + Synpcc7942_2515 0.19 -0.1
2,594,625 - Synpcc7942_2515 0.19 -1.1
2,594,635 - Synpcc7942_2515 0.20 +0.9
2,594,638 + Synpcc7942_2515 0.20 -0.1
2,594,666 - Synpcc7942_2515 0.21 +2.6
2,594,671 - Synpcc7942_2515 0.21 -0.5
2,594,671 - Synpcc7942_2515 0.21 +1.6
2,594,671 - Synpcc7942_2515 0.21 +2.3
2,594,671 - Synpcc7942_2515 0.21 -0.6
2,594,684 - Synpcc7942_2515 0.22 +0.7
2,594,729 - Synpcc7942_2515 0.24 +0.5
2,594,734 - Synpcc7942_2515 0.24 -0.2
2,594,795 - Synpcc7942_2515 0.27 -2.2
2,594,814 + Synpcc7942_2515 0.27 -0.8
2,594,831 + Synpcc7942_2515 0.28 -0.9
2,594,869 + Synpcc7942_2515 0.30 -1.7
2,594,904 + Synpcc7942_2515 0.31 -1.7
2,594,942 + Synpcc7942_2515 0.33 -0.4
2,594,952 + Synpcc7942_2515 0.34 -0.9
2,594,952 + Synpcc7942_2515 0.34 -0.5
2,594,952 + Synpcc7942_2515 0.34 +1.8
2,594,952 + Synpcc7942_2515 0.34 -1.5
2,594,952 + Synpcc7942_2515 0.34 -0.8
2,594,952 + Synpcc7942_2515 0.34 -0.9
2,594,960 - Synpcc7942_2515 0.34 -0.4
2,594,960 - Synpcc7942_2515 0.34 +0.2
2,594,970 - Synpcc7942_2515 0.34 -1.9
2,594,984 + Synpcc7942_2515 0.35 +2.4
2,594,987 - Synpcc7942_2515 0.35 -1.4
2,594,993 + Synpcc7942_2515 0.35 -1.7
2,595,001 - Synpcc7942_2515 0.36 +0.4
2,595,039 + Synpcc7942_2515 0.37 +0.2
2,595,039 + Synpcc7942_2515 0.37 +0.1
2,595,043 + Synpcc7942_2515 0.38 -1.6
2,595,074 - Synpcc7942_2515 0.39 +1.6
2,595,114 - -0.2
2,595,137 - Synpcc7942_2515 0.42 +0.2
2,595,153 + Synpcc7942_2515 0.42 -0.9
2,595,155 - Synpcc7942_2515 0.42 -0.0

Or see this region's nucleotide sequence