Experiment: BG11 with Chloride 3.90625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt btpA and argF are separated by 71 nucleotides argF and Synpcc7942_2515 are separated by 33 nucleotides
Synpcc7942_2513: btpA - Photosystem I assembly BtpA, at 2,592,285 to 2,593,169
btpA
Synpcc7942_2514: argF - ornithine carbamoyltransferase, at 2,593,241 to 2,594,158
argF
Synpcc7942_2515: Synpcc7942_2515 - putative DNA helicase, at 2,594,192 to 2,596,459
_2515
Position (kb)
2593
2594
2595 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2592.241 kb on + strand at 2592.253 kb on + strand at 2592.255 kb on + strand at 2592.260 kb on - strand at 2592.261 kb on - strand at 2593.203 kb on - strand at 2593.207 kb on + strand at 2594.153 kb on + strand at 2594.153 kb on + strand at 2594.153 kb on + strand at 2594.153 kb on + strand at 2594.153 kb on + strand at 2594.153 kb on + strand at 2594.161 kb on - strand at 2594.171 kb on - strand at 2594.176 kb on - strand at 2594.201 kb on + strand at 2594.209 kb on - strand at 2594.223 kb on + strand at 2594.239 kb on + strand at 2594.264 kb on - strand at 2594.272 kb on - strand at 2594.279 kb on + strand at 2594.291 kb on + strand at 2594.330 kb on + strand at 2594.330 kb on + strand at 2594.330 kb on + strand at 2594.330 kb on + strand at 2594.338 kb on - strand at 2594.338 kb on - strand at 2594.338 kb on - strand at 2594.348 kb on - strand at 2594.382 kb on + strand at 2594.382 kb on - strand at 2594.416 kb on + strand at 2594.423 kb on - strand, within Synpcc7942_2515 at 2594.429 kb on + strand, within Synpcc7942_2515 at 2594.441 kb on - strand, within Synpcc7942_2515 at 2594.455 kb on + strand, within Synpcc7942_2515 at 2594.455 kb on + strand, within Synpcc7942_2515 at 2594.486 kb on - strand, within Synpcc7942_2515 at 2594.493 kb on - strand, within Synpcc7942_2515 at 2594.545 kb on - strand, within Synpcc7942_2515 at 2594.570 kb on + strand, within Synpcc7942_2515 at 2594.574 kb on + strand, within Synpcc7942_2515 at 2594.607 kb on + strand, within Synpcc7942_2515 at 2594.607 kb on + strand at 2594.615 kb on - strand, within Synpcc7942_2515 at 2594.615 kb on - strand, within Synpcc7942_2515 at 2594.617 kb on + strand, within Synpcc7942_2515 at 2594.625 kb on - strand, within Synpcc7942_2515 at 2594.635 kb on - strand, within Synpcc7942_2515 at 2594.638 kb on + strand, within Synpcc7942_2515 at 2594.666 kb on - strand, within Synpcc7942_2515 at 2594.671 kb on - strand, within Synpcc7942_2515 at 2594.671 kb on - strand, within Synpcc7942_2515 at 2594.671 kb on - strand, within Synpcc7942_2515 at 2594.671 kb on - strand, within Synpcc7942_2515 at 2594.684 kb on - strand, within Synpcc7942_2515 at 2594.729 kb on - strand, within Synpcc7942_2515 at 2594.734 kb on - strand, within Synpcc7942_2515 at 2594.795 kb on - strand, within Synpcc7942_2515 at 2594.814 kb on + strand, within Synpcc7942_2515 at 2594.831 kb on + strand, within Synpcc7942_2515 at 2594.869 kb on + strand, within Synpcc7942_2515 at 2594.904 kb on + strand, within Synpcc7942_2515 at 2594.942 kb on + strand, within Synpcc7942_2515 at 2594.952 kb on + strand, within Synpcc7942_2515 at 2594.952 kb on + strand, within Synpcc7942_2515 at 2594.952 kb on + strand, within Synpcc7942_2515 at 2594.952 kb on + strand, within Synpcc7942_2515 at 2594.952 kb on + strand, within Synpcc7942_2515 at 2594.952 kb on + strand, within Synpcc7942_2515 at 2594.960 kb on - strand, within Synpcc7942_2515 at 2594.960 kb on - strand, within Synpcc7942_2515 at 2594.970 kb on - strand, within Synpcc7942_2515 at 2594.984 kb on + strand, within Synpcc7942_2515 at 2594.987 kb on - strand, within Synpcc7942_2515 at 2594.993 kb on + strand, within Synpcc7942_2515 at 2595.001 kb on - strand, within Synpcc7942_2515 at 2595.039 kb on + strand, within Synpcc7942_2515 at 2595.039 kb on + strand, within Synpcc7942_2515 at 2595.043 kb on + strand, within Synpcc7942_2515 at 2595.074 kb on - strand, within Synpcc7942_2515 at 2595.114 kb on - strand at 2595.137 kb on - strand, within Synpcc7942_2515 at 2595.153 kb on + strand, within Synpcc7942_2515 at 2595.155 kb on - strand, within Synpcc7942_2515
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chloride 3.90625 mM remove 2,592,241 + -0.1 2,592,253 + -2.9 2,592,255 + -0.6 2,592,260 - -0.9 2,592,261 - +1.6 2,593,203 - -0.9 2,593,207 + +0.3 2,594,153 + -0.7 2,594,153 + -0.3 2,594,153 + -1.3 2,594,153 + +0.1 2,594,153 + -0.3 2,594,153 + -0.6 2,594,161 - +0.0 2,594,171 - +0.5 2,594,176 - -0.1 2,594,201 + -1.7 2,594,209 - -1.8 2,594,223 + +1.7 2,594,239 + -1.4 2,594,264 - -1.0 2,594,272 - +0.8 2,594,279 + -0.5 2,594,291 + +3.3 2,594,330 + -0.5 2,594,330 + +0.8 2,594,330 + +0.6 2,594,330 + -0.1 2,594,338 - +1.9 2,594,338 - -0.4 2,594,338 - -0.4 2,594,348 - +1.6 2,594,382 + +0.0 2,594,382 - +0.8 2,594,416 + -0.2 2,594,423 - Synpcc7942_2515 0.10 +0.1 2,594,429 + Synpcc7942_2515 0.10 -0.3 2,594,441 - Synpcc7942_2515 0.11 +0.5 2,594,455 + Synpcc7942_2515 0.12 -1.4 2,594,455 + Synpcc7942_2515 0.12 -1.1 2,594,486 - Synpcc7942_2515 0.13 -2.0 2,594,493 - Synpcc7942_2515 0.13 -0.5 2,594,545 - Synpcc7942_2515 0.16 -1.5 2,594,570 + Synpcc7942_2515 0.17 +0.6 2,594,574 + Synpcc7942_2515 0.17 +2.0 2,594,607 + Synpcc7942_2515 0.18 +0.0 2,594,607 + +0.8 2,594,615 - Synpcc7942_2515 0.19 -1.7 2,594,615 - Synpcc7942_2515 0.19 -1.3 2,594,617 + Synpcc7942_2515 0.19 -0.1 2,594,625 - Synpcc7942_2515 0.19 -1.1 2,594,635 - Synpcc7942_2515 0.20 +0.9 2,594,638 + Synpcc7942_2515 0.20 -0.1 2,594,666 - Synpcc7942_2515 0.21 +2.6 2,594,671 - Synpcc7942_2515 0.21 -0.5 2,594,671 - Synpcc7942_2515 0.21 +1.6 2,594,671 - Synpcc7942_2515 0.21 +2.3 2,594,671 - Synpcc7942_2515 0.21 -0.6 2,594,684 - Synpcc7942_2515 0.22 +0.7 2,594,729 - Synpcc7942_2515 0.24 +0.5 2,594,734 - Synpcc7942_2515 0.24 -0.2 2,594,795 - Synpcc7942_2515 0.27 -2.2 2,594,814 + Synpcc7942_2515 0.27 -0.8 2,594,831 + Synpcc7942_2515 0.28 -0.9 2,594,869 + Synpcc7942_2515 0.30 -1.7 2,594,904 + Synpcc7942_2515 0.31 -1.7 2,594,942 + Synpcc7942_2515 0.33 -0.4 2,594,952 + Synpcc7942_2515 0.34 -0.9 2,594,952 + Synpcc7942_2515 0.34 -0.5 2,594,952 + Synpcc7942_2515 0.34 +1.8 2,594,952 + Synpcc7942_2515 0.34 -1.5 2,594,952 + Synpcc7942_2515 0.34 -0.8 2,594,952 + Synpcc7942_2515 0.34 -0.9 2,594,960 - Synpcc7942_2515 0.34 -0.4 2,594,960 - Synpcc7942_2515 0.34 +0.2 2,594,970 - Synpcc7942_2515 0.34 -1.9 2,594,984 + Synpcc7942_2515 0.35 +2.4 2,594,987 - Synpcc7942_2515 0.35 -1.4 2,594,993 + Synpcc7942_2515 0.35 -1.7 2,595,001 - Synpcc7942_2515 0.36 +0.4 2,595,039 + Synpcc7942_2515 0.37 +0.2 2,595,039 + Synpcc7942_2515 0.37 +0.1 2,595,043 + Synpcc7942_2515 0.38 -1.6 2,595,074 - Synpcc7942_2515 0.39 +1.6 2,595,114 - -0.2 2,595,137 - Synpcc7942_2515 0.42 +0.2 2,595,153 + Synpcc7942_2515 0.42 -0.9 2,595,155 - Synpcc7942_2515 0.42 -0.0
Or see this region's nucleotide sequence