Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28465

Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS28460 and RR42_RS28465 are separated by 530 nucleotidesRR42_RS28465 and RR42_RS28470 are separated by 7 nucleotidesRR42_RS28470 and RR42_RS28475 are separated by 249 nucleotides RR42_RS28460: RR42_RS28460 - permease, at 1,744,480 to 1,745,235 _RS28460 RR42_RS28465: RR42_RS28465 - permease, at 1,745,766 to 1,746,857 _RS28465 RR42_RS28470: RR42_RS28470 - hypothetical protein, at 1,746,865 to 1,747,230 _RS28470 RR42_RS28475: RR42_RS28475 - dioxygenase, at 1,747,480 to 1,748,283 _RS28475 Position (kb) 1745 1746 1747Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1744.832 kb on + strand, within RR42_RS28460at 1744.833 kb on - strand, within RR42_RS28460at 1745.026 kb on + strand, within RR42_RS28460at 1745.026 kb on + strand, within RR42_RS28460at 1745.026 kb on + strand, within RR42_RS28460at 1745.027 kb on - strand, within RR42_RS28460at 1745.027 kb on - strand, within RR42_RS28460at 1745.027 kb on - strand, within RR42_RS28460at 1745.122 kb on + strand, within RR42_RS28460at 1745.123 kb on - strand, within RR42_RS28460at 1745.410 kb on + strandat 1745.411 kb on - strandat 1745.508 kb on + strandat 1745.508 kb on + strandat 1745.508 kb on + strandat 1745.508 kb on + strandat 1745.508 kb on + strandat 1745.844 kb on + strandat 1745.904 kb on + strand, within RR42_RS28465at 1745.904 kb on + strand, within RR42_RS28465at 1745.904 kb on + strand, within RR42_RS28465at 1745.905 kb on - strand, within RR42_RS28465at 1746.012 kb on + strand, within RR42_RS28465at 1746.013 kb on - strand, within RR42_RS28465at 1746.013 kb on - strand, within RR42_RS28465at 1746.224 kb on + strand, within RR42_RS28465at 1746.417 kb on + strand, within RR42_RS28465at 1746.417 kb on + strand, within RR42_RS28465at 1746.417 kb on + strand, within RR42_RS28465at 1746.418 kb on - strand, within RR42_RS28465at 1746.418 kb on - strand, within RR42_RS28465at 1746.418 kb on - strand, within RR42_RS28465at 1746.419 kb on + strand, within RR42_RS28465at 1746.419 kb on + strand, within RR42_RS28465at 1746.419 kb on + strand, within RR42_RS28465at 1746.420 kb on - strand, within RR42_RS28465at 1746.420 kb on - strand, within RR42_RS28465at 1746.420 kb on - strand, within RR42_RS28465at 1746.420 kb on - strand, within RR42_RS28465at 1746.543 kb on + strand, within RR42_RS28465at 1746.543 kb on + strand, within RR42_RS28465at 1746.867 kb on - strandat 1746.867 kb on - strandat 1746.882 kb on - strandat 1747.315 kb on + strandat 1747.315 kb on + strandat 1747.354 kb on + strandat 1747.404 kb on + strandat 1747.492 kb on - strandat 1747.669 kb on + strand, within RR42_RS28475at 1747.765 kb on + strand, within RR42_RS28475at 1747.792 kb on + strand, within RR42_RS28475at 1747.792 kb on + strand, within RR42_RS28475at 1747.792 kb on + strand, within RR42_RS28475at 1747.792 kb on + strand, within RR42_RS28475at 1747.792 kb on + strand, within RR42_RS28475at 1747.813 kb on + strand, within RR42_RS28475at 1747.814 kb on - strand, within RR42_RS28475

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM
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1,744,832 + RR42_RS28460 0.47 -1.7
1,744,833 - RR42_RS28460 0.47 +1.5
1,745,026 + RR42_RS28460 0.72 +0.2
1,745,026 + RR42_RS28460 0.72 +0.8
1,745,026 + RR42_RS28460 0.72 +0.1
1,745,027 - RR42_RS28460 0.72 +0.4
1,745,027 - RR42_RS28460 0.72 -2.8
1,745,027 - RR42_RS28460 0.72 +0.2
1,745,122 + RR42_RS28460 0.85 +0.5
1,745,123 - RR42_RS28460 0.85 +0.9
1,745,410 + -0.0
1,745,411 - +0.2
1,745,508 + +0.6
1,745,508 + -0.5
1,745,508 + -0.9
1,745,508 + +1.3
1,745,508 + -1.5
1,745,844 + +1.0
1,745,904 + RR42_RS28465 0.13 +1.0
1,745,904 + RR42_RS28465 0.13 -0.3
1,745,904 + RR42_RS28465 0.13 -0.8
1,745,905 - RR42_RS28465 0.13 +0.2
1,746,012 + RR42_RS28465 0.23 -0.0
1,746,013 - RR42_RS28465 0.23 -0.0
1,746,013 - RR42_RS28465 0.23 +0.1
1,746,224 + RR42_RS28465 0.42 -0.5
1,746,417 + RR42_RS28465 0.60 -0.0
1,746,417 + RR42_RS28465 0.60 +0.5
1,746,417 + RR42_RS28465 0.60 -0.3
1,746,418 - RR42_RS28465 0.60 +0.3
1,746,418 - RR42_RS28465 0.60 -0.9
1,746,418 - RR42_RS28465 0.60 +0.6
1,746,419 + RR42_RS28465 0.60 -0.5
1,746,419 + RR42_RS28465 0.60 +3.1
1,746,419 + RR42_RS28465 0.60 +0.3
1,746,420 - RR42_RS28465 0.60 -1.9
1,746,420 - RR42_RS28465 0.60 +0.4
1,746,420 - RR42_RS28465 0.60 -0.9
1,746,420 - RR42_RS28465 0.60 -0.5
1,746,543 + RR42_RS28465 0.71 -0.3
1,746,543 + RR42_RS28465 0.71 +0.4
1,746,867 - +1.4
1,746,867 - -0.3
1,746,882 - +0.5
1,747,315 + -2.4
1,747,315 + +0.1
1,747,354 + +0.6
1,747,404 + +0.1
1,747,492 - +0.9
1,747,669 + RR42_RS28475 0.24 -0.4
1,747,765 + RR42_RS28475 0.35 +0.0
1,747,792 + RR42_RS28475 0.39 -1.2
1,747,792 + RR42_RS28475 0.39 -0.6
1,747,792 + RR42_RS28475 0.39 -1.4
1,747,792 + RR42_RS28475 0.39 +1.4
1,747,792 + RR42_RS28475 0.39 +0.6
1,747,813 + RR42_RS28475 0.41 +0.7
1,747,814 - RR42_RS28475 0.42 -1.7

Or see this region's nucleotide sequence