Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27635

Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS27630 and RR42_RS27635 are separated by 454 nucleotidesRR42_RS27635 and RR42_RS27640 are separated by 470 nucleotides RR42_RS27630: RR42_RS27630 - lipase, at 1,562,813 to 1,563,853 _RS27630 RR42_RS27635: RR42_RS27635 - hypothetical protein, at 1,564,308 to 1,564,529 _RS27635 RR42_RS27640: RR42_RS27640 - CDP-diacylglycerol pyrophosphatase, at 1,565,000 to 1,565,776 _RS27640 Position (kb) 1564 1565Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1563.602 kb on + strand, within RR42_RS27630at 1563.602 kb on + strand, within RR42_RS27630at 1563.728 kb on + strand, within RR42_RS27630at 1563.755 kb on + strandat 1563.755 kb on + strandat 1563.755 kb on + strandat 1563.756 kb on - strandat 1563.756 kb on - strandat 1563.756 kb on - strandat 1563.756 kb on - strandat 1563.756 kb on - strandat 1563.867 kb on + strandat 1563.868 kb on - strandat 1564.262 kb on + strandat 1564.263 kb on - strandat 1564.423 kb on + strand, within RR42_RS27635at 1564.718 kb on + strandat 1564.718 kb on + strandat 1564.718 kb on + strandat 1564.719 kb on - strandat 1564.780 kb on + strandat 1564.780 kb on + strandat 1564.781 kb on - strandat 1564.781 kb on - strandat 1564.815 kb on + strandat 1565.013 kb on + strandat 1565.013 kb on + strandat 1565.014 kb on - strandat 1565.175 kb on - strand, within RR42_RS27640at 1565.395 kb on + strand, within RR42_RS27640at 1565.455 kb on + strand, within RR42_RS27640at 1565.499 kb on + strand, within RR42_RS27640at 1565.499 kb on + strand, within RR42_RS27640

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM
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1,563,602 + RR42_RS27630 0.76 -0.3
1,563,602 + RR42_RS27630 0.76 -3.6
1,563,728 + RR42_RS27630 0.88 +1.0
1,563,755 + +0.2
1,563,755 + -0.7
1,563,755 + -1.4
1,563,756 - -0.1
1,563,756 - +1.3
1,563,756 - +1.5
1,563,756 - -0.9
1,563,756 - -0.5
1,563,867 + -0.4
1,563,868 - -0.3
1,564,262 + -0.0
1,564,263 - -0.3
1,564,423 + RR42_RS27635 0.52 -0.2
1,564,718 + -0.2
1,564,718 + -3.3
1,564,718 + +0.4
1,564,719 - -1.3
1,564,780 + +1.0
1,564,780 + +0.6
1,564,781 - -1.4
1,564,781 - -0.9
1,564,815 + -0.0
1,565,013 + +1.1
1,565,013 + +1.9
1,565,014 - +0.1
1,565,175 - RR42_RS27640 0.23 -1.0
1,565,395 + RR42_RS27640 0.51 +0.7
1,565,455 + RR42_RS27640 0.59 +1.1
1,565,499 + RR42_RS27640 0.64 -1.1
1,565,499 + RR42_RS27640 0.64 +0.3

Or see this region's nucleotide sequence