Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24965 and RR42_RS24970 are separated by 98 nucleotides RR42_RS24970 and RR42_RS24975 are separated by 48 nucleotides
RR42_RS24965: RR42_RS24965 - acyl-CoA dehydrogenase, at 938,788 to 939,945
_RS24965
RR42_RS24970: RR42_RS24970 - acetyl-CoA acetyltransferase, at 940,044 to 941,252
_RS24970
RR42_RS24975: RR42_RS24975 - acetyl-CoA hydrolase, at 941,301 to 942,617
_RS24975
Position (kb) 940
941
942 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 939.065 kb on + strand, within RR42_RS24965 at 939.065 kb on + strand, within RR42_RS24965 at 939.280 kb on - strand, within RR42_RS24965 at 939.280 kb on - strand, within RR42_RS24965 at 939.435 kb on + strand, within RR42_RS24965 at 939.506 kb on + strand, within RR42_RS24965 at 939.507 kb on - strand, within RR42_RS24965 at 939.959 kb on - strand at 940.730 kb on + strand, within RR42_RS24970 at 940.730 kb on + strand, within RR42_RS24970 at 940.730 kb on + strand, within RR42_RS24970 at 940.731 kb on - strand, within RR42_RS24970 at 940.731 kb on - strand, within RR42_RS24970 at 940.735 kb on + strand, within RR42_RS24970 at 940.735 kb on + strand, within RR42_RS24970 at 940.736 kb on - strand, within RR42_RS24970 at 940.835 kb on - strand, within RR42_RS24970 at 940.882 kb on + strand, within RR42_RS24970 at 940.882 kb on + strand, within RR42_RS24970 at 941.058 kb on + strand, within RR42_RS24970 at 941.059 kb on - strand, within RR42_RS24970 at 941.281 kb on + strand at 941.282 kb on - strand at 941.632 kb on + strand, within RR42_RS24975 at 941.633 kb on - strand, within RR42_RS24975 at 941.633 kb on - strand, within RR42_RS24975 at 941.742 kb on - strand, within RR42_RS24975 at 941.743 kb on + strand, within RR42_RS24975 at 941.743 kb on + strand, within RR42_RS24975 at 941.743 kb on + strand, within RR42_RS24975 at 941.743 kb on + strand, within RR42_RS24975 at 941.743 kb on + strand, within RR42_RS24975 at 941.743 kb on + strand, within RR42_RS24975 at 941.744 kb on - strand, within RR42_RS24975 at 942.133 kb on + strand, within RR42_RS24975 at 942.133 kb on + strand, within RR42_RS24975 at 942.133 kb on + strand, within RR42_RS24975 at 942.134 kb on - strand, within RR42_RS24975 at 942.202 kb on + strand, within RR42_RS24975 at 942.203 kb on - strand, within RR42_RS24975 at 942.226 kb on + strand, within RR42_RS24975
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 939,065 + RR42_RS24965 0.24 -0.4 939,065 + RR42_RS24965 0.24 +0.6 939,280 - RR42_RS24965 0.42 -0.3 939,280 - RR42_RS24965 0.42 +1.2 939,435 + RR42_RS24965 0.56 +0.1 939,506 + RR42_RS24965 0.62 +0.6 939,507 - RR42_RS24965 0.62 +1.0 939,959 - -0.1 940,730 + RR42_RS24970 0.57 -0.6 940,730 + RR42_RS24970 0.57 -0.4 940,730 + RR42_RS24970 0.57 -2.8 940,731 - RR42_RS24970 0.57 +1.2 940,731 - RR42_RS24970 0.57 +0.3 940,735 + RR42_RS24970 0.57 -1.2 940,735 + RR42_RS24970 0.57 +0.2 940,736 - RR42_RS24970 0.57 -0.8 940,835 - RR42_RS24970 0.65 -1.1 940,882 + RR42_RS24970 0.69 -0.4 940,882 + RR42_RS24970 0.69 -1.6 941,058 + RR42_RS24970 0.84 -2.1 941,059 - RR42_RS24970 0.84 -1.4 941,281 + +1.2 941,282 - +0.9 941,632 + RR42_RS24975 0.25 +0.9 941,633 - RR42_RS24975 0.25 -0.3 941,633 - RR42_RS24975 0.25 -0.5 941,742 - RR42_RS24975 0.33 -0.1 941,743 + RR42_RS24975 0.34 -0.5 941,743 + RR42_RS24975 0.34 +0.4 941,743 + RR42_RS24975 0.34 -0.6 941,743 + RR42_RS24975 0.34 -2.0 941,743 + RR42_RS24975 0.34 -0.5 941,743 + RR42_RS24975 0.34 +1.4 941,744 - RR42_RS24975 0.34 -0.5 942,133 + RR42_RS24975 0.63 -0.3 942,133 + RR42_RS24975 0.63 -0.4 942,133 + RR42_RS24975 0.63 +2.8 942,134 - RR42_RS24975 0.63 +0.3 942,202 + RR42_RS24975 0.68 +1.1 942,203 - RR42_RS24975 0.68 -0.8 942,226 + RR42_RS24975 0.70 -1.5
Or see this region's nucleotide sequence