Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23725

Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23720 and RR42_RS23725 are separated by 270 nucleotidesRR42_RS23725 and RR42_RS23730 are separated by 13 nucleotidesRR42_RS23730 and RR42_RS23735 are separated by 15 nucleotides RR42_RS23720: RR42_RS23720 - hypothetical protein, at 647,414 to 648,286 _RS23720 RR42_RS23725: RR42_RS23725 - phenylacetate-CoA oxygenase, at 648,557 to 649,561 _RS23725 RR42_RS23730: RR42_RS23730 - phenylacetate-CoA oxygenase subunit PaaB, at 649,575 to 649,859 _RS23730 RR42_RS23735: RR42_RS23735 - phenylacetyl-CoA 1,2-epoxidase, structural subunit (EC 1.14.13.149) (from data), at 649,875 to 650,675 _RS23735 Position (kb) 648 649 650Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 647.563 kb on + strand, within RR42_RS23720at 647.564 kb on - strand, within RR42_RS23720at 647.605 kb on - strand, within RR42_RS23720at 647.616 kb on - strand, within RR42_RS23720at 647.739 kb on + strand, within RR42_RS23720at 647.739 kb on + strand, within RR42_RS23720at 647.739 kb on + strand, within RR42_RS23720at 647.739 kb on + strand, within RR42_RS23720at 647.740 kb on - strand, within RR42_RS23720at 647.740 kb on - strand, within RR42_RS23720at 647.740 kb on - strand, within RR42_RS23720at 647.783 kb on + strand, within RR42_RS23720at 647.784 kb on - strand, within RR42_RS23720at 647.784 kb on - strand, within RR42_RS23720at 647.784 kb on - strand, within RR42_RS23720at 647.784 kb on - strand, within RR42_RS23720at 647.814 kb on + strand, within RR42_RS23720at 647.834 kb on + strand, within RR42_RS23720at 647.834 kb on + strand, within RR42_RS23720at 647.835 kb on - strand, within RR42_RS23720at 647.835 kb on - strand, within RR42_RS23720at 647.835 kb on - strand, within RR42_RS23720at 647.853 kb on + strand, within RR42_RS23720at 647.865 kb on + strand, within RR42_RS23720at 647.865 kb on + strand, within RR42_RS23720at 648.008 kb on - strand, within RR42_RS23720at 648.243 kb on - strandat 648.243 kb on - strandat 648.316 kb on + strandat 648.316 kb on + strandat 648.316 kb on + strandat 648.388 kb on + strandat 648.389 kb on - strandat 648.402 kb on + strandat 648.402 kb on + strandat 648.402 kb on + strandat 648.402 kb on + strandat 648.403 kb on - strandat 648.476 kb on + strandat 648.479 kb on - strandat 648.560 kb on + strandat 648.560 kb on + strandat 648.560 kb on + strandat 648.560 kb on + strandat 648.560 kb on + strandat 648.560 kb on + strandat 648.561 kb on - strandat 648.561 kb on - strandat 648.561 kb on - strandat 648.561 kb on - strandat 648.561 kb on - strandat 648.561 kb on - strandat 648.561 kb on - strandat 648.701 kb on + strand, within RR42_RS23725at 648.702 kb on - strand, within RR42_RS23725at 648.702 kb on - strand, within RR42_RS23725at 648.854 kb on + strand, within RR42_RS23725at 648.855 kb on - strand, within RR42_RS23725at 648.855 kb on - strand, within RR42_RS23725at 648.861 kb on - strand, within RR42_RS23725at 648.932 kb on + strand, within RR42_RS23725at 648.932 kb on + strand, within RR42_RS23725at 648.933 kb on - strand, within RR42_RS23725at 649.043 kb on + strand, within RR42_RS23725at 649.043 kb on + strand, within RR42_RS23725at 649.388 kb on + strand, within RR42_RS23725at 649.388 kb on + strand, within RR42_RS23725at 649.614 kb on - strand, within RR42_RS23730at 649.698 kb on + strand, within RR42_RS23730at 649.699 kb on - strand, within RR42_RS23730at 649.699 kb on - strand, within RR42_RS23730at 649.857 kb on + strandat 649.857 kb on + strandat 649.857 kb on + strandat 649.858 kb on - strandat 649.858 kb on - strandat 649.928 kb on + strandat 649.987 kb on + strand, within RR42_RS23735at 649.987 kb on + strand, within RR42_RS23735at 650.038 kb on - strand, within RR42_RS23735at 650.038 kb on - strand, within RR42_RS23735at 650.097 kb on + strand, within RR42_RS23735at 650.097 kb on + strand, within RR42_RS23735at 650.133 kb on + strand, within RR42_RS23735at 650.133 kb on + strand, within RR42_RS23735at 650.133 kb on + strand, within RR42_RS23735at 650.133 kb on + strand, within RR42_RS23735at 650.134 kb on - strand, within RR42_RS23735at 650.134 kb on - strand, within RR42_RS23735at 650.196 kb on + strand, within RR42_RS23735at 650.197 kb on - strand, within RR42_RS23735at 650.197 kb on - strand, within RR42_RS23735at 650.226 kb on + strand, within RR42_RS23735at 650.226 kb on + strand, within RR42_RS23735at 650.410 kb on - strand, within RR42_RS23735

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM
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647,563 + RR42_RS23720 0.17 +0.3
647,564 - RR42_RS23720 0.17 -2.8
647,605 - RR42_RS23720 0.22 -0.1
647,616 - RR42_RS23720 0.23 -0.2
647,739 + RR42_RS23720 0.37 +1.0
647,739 + RR42_RS23720 0.37 -0.9
647,739 + RR42_RS23720 0.37 +1.7
647,739 + RR42_RS23720 0.37 -0.7
647,740 - RR42_RS23720 0.37 +0.8
647,740 - RR42_RS23720 0.37 +0.3
647,740 - RR42_RS23720 0.37 +1.1
647,783 + RR42_RS23720 0.42 -1.8
647,784 - RR42_RS23720 0.42 -1.3
647,784 - RR42_RS23720 0.42 -0.7
647,784 - RR42_RS23720 0.42 +0.5
647,784 - RR42_RS23720 0.42 +0.1
647,814 + RR42_RS23720 0.46 -0.9
647,834 + RR42_RS23720 0.48 +0.3
647,834 + RR42_RS23720 0.48 +0.4
647,835 - RR42_RS23720 0.48 -0.1
647,835 - RR42_RS23720 0.48 +0.6
647,835 - RR42_RS23720 0.48 -0.6
647,853 + RR42_RS23720 0.50 -0.3
647,865 + RR42_RS23720 0.52 -1.7
647,865 + RR42_RS23720 0.52 -2.0
648,008 - RR42_RS23720 0.68 +0.7
648,243 - -1.4
648,243 - +1.2
648,316 + +1.8
648,316 + +0.3
648,316 + -0.3
648,388 + +3.5
648,389 - +0.3
648,402 + +0.1
648,402 + +0.8
648,402 + +0.7
648,402 + -0.7
648,403 - -0.2
648,476 + +0.6
648,479 - +0.5
648,560 + +0.5
648,560 + -0.8
648,560 + -0.3
648,560 + -0.3
648,560 + +1.0
648,560 + +0.3
648,561 - +1.8
648,561 - +0.3
648,561 - +1.3
648,561 - +0.2
648,561 - +0.3
648,561 - +0.9
648,561 - +0.4
648,701 + RR42_RS23725 0.14 -0.0
648,702 - RR42_RS23725 0.14 +0.2
648,702 - RR42_RS23725 0.14 -1.3
648,854 + RR42_RS23725 0.30 +1.9
648,855 - RR42_RS23725 0.30 +1.4
648,855 - RR42_RS23725 0.30 +1.8
648,861 - RR42_RS23725 0.30 -0.5
648,932 + RR42_RS23725 0.37 +0.3
648,932 + RR42_RS23725 0.37 -0.2
648,933 - RR42_RS23725 0.37 -2.5
649,043 + RR42_RS23725 0.48 +1.1
649,043 + RR42_RS23725 0.48 +0.1
649,388 + RR42_RS23725 0.83 -1.3
649,388 + RR42_RS23725 0.83 +0.6
649,614 - RR42_RS23730 0.14 -0.8
649,698 + RR42_RS23730 0.43 +1.9
649,699 - RR42_RS23730 0.44 +1.1
649,699 - RR42_RS23730 0.44 +1.3
649,857 + -0.1
649,857 + -1.7
649,857 + -0.5
649,858 - -0.3
649,858 - +0.2
649,928 + +2.0
649,987 + RR42_RS23735 0.14 -1.0
649,987 + RR42_RS23735 0.14 -0.4
650,038 - RR42_RS23735 0.20 +1.1
650,038 - RR42_RS23735 0.20 -0.7
650,097 + RR42_RS23735 0.28 +0.3
650,097 + RR42_RS23735 0.28 +0.7
650,133 + RR42_RS23735 0.32 +0.5
650,133 + RR42_RS23735 0.32 -3.0
650,133 + RR42_RS23735 0.32 +0.0
650,133 + RR42_RS23735 0.32 -0.2
650,134 - RR42_RS23735 0.32 -0.8
650,134 - RR42_RS23735 0.32 +0.6
650,196 + RR42_RS23735 0.40 -0.9
650,197 - RR42_RS23735 0.40 -1.5
650,197 - RR42_RS23735 0.40 -0.0
650,226 + RR42_RS23735 0.44 -0.6
650,226 + RR42_RS23735 0.44 +0.1
650,410 - RR42_RS23735 0.67 -0.0

Or see this region's nucleotide sequence