Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23400 and RR42_RS23405 are separated by 264 nucleotides RR42_RS23405 and RR42_RS23410 are separated by 236 nucleotides
RR42_RS23400: RR42_RS23400 - ABC transporter substrate-binding protein, at 577,365 to 578,354
_RS23400
RR42_RS23405: RR42_RS23405 - hypothetical protein, at 578,619 to 579,512
_RS23405
RR42_RS23410: RR42_RS23410 - hypothetical protein, at 579,749 to 580,648
_RS23410
Position (kb) 578
579
580 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 577.645 kb on - strand, within RR42_RS23400 at 577.645 kb on - strand, within RR42_RS23400 at 577.646 kb on + strand, within RR42_RS23400 at 577.646 kb on + strand, within RR42_RS23400 at 577.646 kb on + strand, within RR42_RS23400 at 577.647 kb on - strand, within RR42_RS23400 at 577.647 kb on - strand, within RR42_RS23400 at 577.647 kb on - strand, within RR42_RS23400 at 577.677 kb on + strand, within RR42_RS23400 at 577.707 kb on + strand, within RR42_RS23400 at 577.708 kb on - strand, within RR42_RS23400 at 577.725 kb on + strand, within RR42_RS23400 at 577.725 kb on + strand, within RR42_RS23400 at 577.726 kb on - strand, within RR42_RS23400 at 577.776 kb on - strand, within RR42_RS23400 at 577.839 kb on + strand, within RR42_RS23400 at 577.839 kb on + strand, within RR42_RS23400 at 577.840 kb on - strand, within RR42_RS23400 at 577.932 kb on + strand, within RR42_RS23400 at 577.933 kb on - strand, within RR42_RS23400 at 577.979 kb on - strand, within RR42_RS23400 at 577.979 kb on - strand, within RR42_RS23400 at 577.979 kb on - strand, within RR42_RS23400 at 578.008 kb on + strand, within RR42_RS23400 at 578.009 kb on - strand, within RR42_RS23400 at 578.010 kb on + strand, within RR42_RS23400 at 578.010 kb on + strand, within RR42_RS23400 at 578.011 kb on - strand, within RR42_RS23400 at 578.011 kb on - strand, within RR42_RS23400 at 578.157 kb on - strand, within RR42_RS23400 at 578.244 kb on - strand, within RR42_RS23400 at 578.613 kb on + strand at 578.614 kb on - strand at 578.661 kb on + strand at 578.750 kb on - strand, within RR42_RS23405 at 578.837 kb on + strand, within RR42_RS23405 at 578.838 kb on - strand, within RR42_RS23405 at 578.876 kb on - strand, within RR42_RS23405 at 578.924 kb on + strand, within RR42_RS23405 at 579.201 kb on + strand, within RR42_RS23405 at 579.202 kb on - strand, within RR42_RS23405 at 579.327 kb on + strand, within RR42_RS23405 at 579.327 kb on + strand, within RR42_RS23405 at 579.328 kb on - strand, within RR42_RS23405 at 579.328 kb on - strand, within RR42_RS23405 at 579.700 kb on + strand at 579.700 kb on + strand at 579.751 kb on - strand at 579.756 kb on - strand at 579.870 kb on - strand, within RR42_RS23410 at 579.947 kb on + strand, within RR42_RS23410 at 579.981 kb on + strand, within RR42_RS23410 at 580.041 kb on + strand, within RR42_RS23410 at 580.041 kb on + strand, within RR42_RS23410 at 580.042 kb on - strand, within RR42_RS23410 at 580.202 kb on + strand, within RR42_RS23410 at 580.202 kb on + strand, within RR42_RS23410 at 580.203 kb on - strand, within RR42_RS23410 at 580.338 kb on + strand, within RR42_RS23410 at 580.338 kb on + strand, within RR42_RS23410 at 580.486 kb on + strand, within RR42_RS23410
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 577,645 - RR42_RS23400 0.28 -0.1 577,645 - RR42_RS23400 0.28 +1.4 577,646 + RR42_RS23400 0.28 +0.7 577,646 + RR42_RS23400 0.28 +0.4 577,646 + RR42_RS23400 0.28 -0.8 577,647 - RR42_RS23400 0.28 +0.7 577,647 - RR42_RS23400 0.28 -0.8 577,647 - RR42_RS23400 0.28 +0.8 577,677 + RR42_RS23400 0.32 -0.3 577,707 + RR42_RS23400 0.35 -1.0 577,708 - RR42_RS23400 0.35 -1.8 577,725 + RR42_RS23400 0.36 +0.7 577,725 + RR42_RS23400 0.36 -0.5 577,726 - RR42_RS23400 0.36 +0.7 577,776 - RR42_RS23400 0.42 +0.4 577,839 + RR42_RS23400 0.48 +0.6 577,839 + RR42_RS23400 0.48 +0.1 577,840 - RR42_RS23400 0.48 -0.9 577,932 + RR42_RS23400 0.57 -0.2 577,933 - RR42_RS23400 0.57 +0.6 577,979 - RR42_RS23400 0.62 -0.1 577,979 - RR42_RS23400 0.62 +0.4 577,979 - RR42_RS23400 0.62 +1.4 578,008 + RR42_RS23400 0.65 +0.9 578,009 - RR42_RS23400 0.65 +0.2 578,010 + RR42_RS23400 0.65 +0.3 578,010 + RR42_RS23400 0.65 -0.6 578,011 - RR42_RS23400 0.65 +1.5 578,011 - RR42_RS23400 0.65 +0.1 578,157 - RR42_RS23400 0.80 -0.3 578,244 - RR42_RS23400 0.89 +1.4 578,613 + +1.3 578,614 - -2.0 578,661 + -0.8 578,750 - RR42_RS23405 0.15 -0.9 578,837 + RR42_RS23405 0.24 -0.6 578,838 - RR42_RS23405 0.24 +0.1 578,876 - RR42_RS23405 0.29 +1.0 578,924 + RR42_RS23405 0.34 -0.6 579,201 + RR42_RS23405 0.65 +1.7 579,202 - RR42_RS23405 0.65 +1.9 579,327 + RR42_RS23405 0.79 -0.7 579,327 + RR42_RS23405 0.79 -3.0 579,328 - RR42_RS23405 0.79 +0.1 579,328 - RR42_RS23405 0.79 +0.4 579,700 + -0.2 579,700 + -2.1 579,751 - +0.6 579,756 - +0.6 579,870 - RR42_RS23410 0.13 -0.8 579,947 + RR42_RS23410 0.22 +0.8 579,981 + RR42_RS23410 0.26 -1.5 580,041 + RR42_RS23410 0.32 +0.2 580,041 + RR42_RS23410 0.32 -1.0 580,042 - RR42_RS23410 0.33 +0.6 580,202 + RR42_RS23410 0.50 +1.2 580,202 + RR42_RS23410 0.50 -1.6 580,203 - RR42_RS23410 0.50 +0.5 580,338 + RR42_RS23410 0.65 +1.1 580,338 + RR42_RS23410 0.65 -0.6 580,486 + RR42_RS23410 0.82 -0.1
Or see this region's nucleotide sequence