Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22685 and RR42_RS22690 are separated by 44 nucleotides RR42_RS22690 and RR42_RS22695 are separated by 316 nucleotides RR42_RS22695 and RR42_RS22700 are separated by 193 nucleotides
RR42_RS22685: RR42_RS22685 - ABC transporter substrate-binding protein, at 424,385 to 425,356
_RS22685
RR42_RS22690: RR42_RS22690 - CoA-transferase, at 425,401 to 426,582
_RS22690
RR42_RS22695: RR42_RS22695 - chemotaxis protein, at 426,899 to 427,324
_RS22695
RR42_RS22700: RR42_RS22700 - phasin, at 427,518 to 428,075
_RS22700
Position (kb) 425
426
427 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 424.408 kb on + strand at 424.648 kb on - strand, within RR42_RS22685 at 424.648 kb on - strand, within RR42_RS22685 at 424.667 kb on + strand, within RR42_RS22685 at 424.667 kb on + strand, within RR42_RS22685 at 424.809 kb on + strand, within RR42_RS22685 at 424.809 kb on + strand, within RR42_RS22685 at 424.810 kb on - strand, within RR42_RS22685 at 424.810 kb on - strand, within RR42_RS22685 at 424.902 kb on + strand, within RR42_RS22685 at 424.903 kb on - strand, within RR42_RS22685 at 424.903 kb on - strand, within RR42_RS22685 at 424.903 kb on - strand, within RR42_RS22685 at 425.034 kb on + strand, within RR42_RS22685 at 425.034 kb on + strand, within RR42_RS22685 at 425.034 kb on + strand, within RR42_RS22685 at 425.128 kb on - strand, within RR42_RS22685 at 425.250 kb on + strand, within RR42_RS22685 at 425.283 kb on + strand at 425.382 kb on - strand at 425.400 kb on - strand at 425.402 kb on + strand at 425.403 kb on - strand at 425.403 kb on - strand at 425.412 kb on + strand at 425.714 kb on + strand, within RR42_RS22690 at 425.714 kb on + strand, within RR42_RS22690 at 425.888 kb on + strand, within RR42_RS22690 at 425.889 kb on - strand, within RR42_RS22690 at 426.008 kb on + strand, within RR42_RS22690 at 426.008 kb on + strand, within RR42_RS22690 at 426.008 kb on + strand, within RR42_RS22690 at 426.008 kb on + strand, within RR42_RS22690 at 426.008 kb on + strand, within RR42_RS22690 at 426.008 kb on + strand, within RR42_RS22690 at 426.008 kb on + strand, within RR42_RS22690 at 426.009 kb on - strand, within RR42_RS22690 at 426.009 kb on - strand, within RR42_RS22690 at 426.009 kb on - strand, within RR42_RS22690 at 426.009 kb on - strand, within RR42_RS22690 at 426.009 kb on - strand, within RR42_RS22690 at 426.009 kb on - strand, within RR42_RS22690 at 426.009 kb on - strand, within RR42_RS22690 at 426.009 kb on - strand, within RR42_RS22690 at 426.089 kb on + strand, within RR42_RS22690 at 426.090 kb on - strand, within RR42_RS22690 at 426.122 kb on + strand, within RR42_RS22690 at 426.122 kb on + strand, within RR42_RS22690 at 426.123 kb on - strand, within RR42_RS22690 at 426.123 kb on - strand, within RR42_RS22690 at 426.123 kb on - strand, within RR42_RS22690 at 426.123 kb on - strand, within RR42_RS22690 at 426.182 kb on + strand, within RR42_RS22690 at 426.218 kb on + strand, within RR42_RS22690 at 426.254 kb on + strand, within RR42_RS22690 at 426.255 kb on - strand, within RR42_RS22690 at 426.255 kb on - strand, within RR42_RS22690 at 426.324 kb on - strand, within RR42_RS22690 at 426.368 kb on + strand, within RR42_RS22690 at 426.425 kb on + strand, within RR42_RS22690 at 426.425 kb on + strand, within RR42_RS22690 at 426.426 kb on - strand, within RR42_RS22690 at 426.472 kb on + strand at 426.472 kb on + strand at 426.472 kb on + strand at 426.472 kb on + strand at 426.473 kb on - strand at 426.532 kb on + strand at 426.533 kb on - strand at 426.653 kb on + strand at 426.653 kb on + strand at 426.654 kb on - strand at 426.654 kb on - strand at 426.792 kb on - strand at 426.950 kb on + strand, within RR42_RS22695 at 426.951 kb on - strand, within RR42_RS22695 at 426.970 kb on + strand, within RR42_RS22695 at 426.971 kb on - strand, within RR42_RS22695 at 427.204 kb on + strand, within RR42_RS22695 at 427.204 kb on + strand, within RR42_RS22695 at 427.322 kb on + strand at 427.383 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 424,408 + -0.1 424,648 - RR42_RS22685 0.27 +0.9 424,648 - RR42_RS22685 0.27 +1.6 424,667 + RR42_RS22685 0.29 +0.2 424,667 + RR42_RS22685 0.29 -1.3 424,809 + RR42_RS22685 0.44 +1.1 424,809 + RR42_RS22685 0.44 +0.2 424,810 - RR42_RS22685 0.44 +0.4 424,810 - RR42_RS22685 0.44 +0.4 424,902 + RR42_RS22685 0.53 -1.4 424,903 - RR42_RS22685 0.53 -0.1 424,903 - RR42_RS22685 0.53 +0.7 424,903 - RR42_RS22685 0.53 +1.4 425,034 + RR42_RS22685 0.67 -0.3 425,034 + RR42_RS22685 0.67 -0.6 425,034 + RR42_RS22685 0.67 -2.3 425,128 - RR42_RS22685 0.76 +0.8 425,250 + RR42_RS22685 0.89 -0.6 425,283 + -1.6 425,382 - +0.3 425,400 - -0.2 425,402 + +0.0 425,403 - +0.4 425,403 - -1.1 425,412 + -2.4 425,714 + RR42_RS22690 0.26 +0.5 425,714 + RR42_RS22690 0.26 +0.9 425,888 + RR42_RS22690 0.41 +0.4 425,889 - RR42_RS22690 0.41 +0.3 426,008 + RR42_RS22690 0.51 -0.6 426,008 + RR42_RS22690 0.51 +0.9 426,008 + RR42_RS22690 0.51 -0.7 426,008 + RR42_RS22690 0.51 +1.2 426,008 + RR42_RS22690 0.51 +2.2 426,008 + RR42_RS22690 0.51 -1.3 426,008 + RR42_RS22690 0.51 +0.5 426,009 - RR42_RS22690 0.51 +2.4 426,009 - RR42_RS22690 0.51 +0.7 426,009 - RR42_RS22690 0.51 +0.9 426,009 - RR42_RS22690 0.51 +0.7 426,009 - RR42_RS22690 0.51 +0.1 426,009 - RR42_RS22690 0.51 +1.0 426,009 - RR42_RS22690 0.51 -0.6 426,009 - RR42_RS22690 0.51 +1.4 426,089 + RR42_RS22690 0.58 +0.3 426,090 - RR42_RS22690 0.58 -0.1 426,122 + RR42_RS22690 0.61 +0.6 426,122 + RR42_RS22690 0.61 +0.6 426,123 - RR42_RS22690 0.61 -0.3 426,123 - RR42_RS22690 0.61 -0.3 426,123 - RR42_RS22690 0.61 -1.0 426,123 - RR42_RS22690 0.61 -3.4 426,182 + RR42_RS22690 0.66 +0.5 426,218 + RR42_RS22690 0.69 +1.3 426,254 + RR42_RS22690 0.72 -0.6 426,255 - RR42_RS22690 0.72 +0.7 426,255 - RR42_RS22690 0.72 +0.1 426,324 - RR42_RS22690 0.78 +0.1 426,368 + RR42_RS22690 0.82 -1.1 426,425 + RR42_RS22690 0.87 -0.3 426,425 + RR42_RS22690 0.87 +0.9 426,426 - RR42_RS22690 0.87 +0.2 426,472 + +0.7 426,472 + -0.7 426,472 + -0.2 426,472 + +0.5 426,473 - -1.1 426,532 + -2.7 426,533 - +1.1 426,653 + +0.1 426,653 + -0.2 426,654 - +1.4 426,654 - -0.6 426,792 - -0.7 426,950 + RR42_RS22695 0.12 -1.1 426,951 - RR42_RS22695 0.12 -2.5 426,970 + RR42_RS22695 0.17 -0.2 426,971 - RR42_RS22695 0.17 +0.7 427,204 + RR42_RS22695 0.72 +0.6 427,204 + RR42_RS22695 0.72 -0.4 427,322 + +0.0 427,383 + +0.2
Or see this region's nucleotide sequence