Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21935 and RR42_RS21940 are separated by 164 nucleotides RR42_RS21940 and RR42_RS21945 are separated by 290 nucleotides
RR42_RS21935: RR42_RS21935 - 4-hydroxybenzoate transporter, at 246,261 to 247,601
_RS21935
RR42_RS21940: RR42_RS21940 - 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) <small>(from data)</small>, at 247,766 to 248,935
_RS21940
RR42_RS21945: RR42_RS21945 - hypothetical protein, at 249,226 to 249,516
_RS21945
Position (kb) 247
248
249 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 246.799 kb on + strand, within RR42_RS21935 at 246.799 kb on + strand, within RR42_RS21935 at 246.823 kb on + strand, within RR42_RS21935 at 246.823 kb on + strand, within RR42_RS21935 at 246.823 kb on + strand, within RR42_RS21935 at 246.823 kb on + strand, within RR42_RS21935 at 246.824 kb on - strand, within RR42_RS21935 at 246.824 kb on - strand, within RR42_RS21935 at 246.939 kb on + strand, within RR42_RS21935 at 246.939 kb on + strand, within RR42_RS21935 at 246.940 kb on - strand, within RR42_RS21935 at 247.096 kb on + strand, within RR42_RS21935 at 247.148 kb on + strand, within RR42_RS21935 at 247.149 kb on - strand, within RR42_RS21935 at 247.201 kb on + strand, within RR42_RS21935 at 247.484 kb on + strand at 247.684 kb on + strand at 247.771 kb on - strand at 247.786 kb on - strand at 247.786 kb on - strand at 247.786 kb on - strand at 247.956 kb on + strand, within RR42_RS21940 at 247.957 kb on - strand, within RR42_RS21940 at 248.016 kb on + strand, within RR42_RS21940 at 248.016 kb on + strand, within RR42_RS21940 at 248.017 kb on - strand, within RR42_RS21940 at 248.017 kb on - strand, within RR42_RS21940 at 248.192 kb on - strand, within RR42_RS21940 at 248.194 kb on + strand, within RR42_RS21940 at 248.274 kb on + strand, within RR42_RS21940 at 248.277 kb on + strand, within RR42_RS21940 at 248.277 kb on + strand, within RR42_RS21940 at 248.278 kb on - strand, within RR42_RS21940 at 248.337 kb on + strand, within RR42_RS21940 at 248.337 kb on + strand, within RR42_RS21940 at 248.338 kb on - strand, within RR42_RS21940 at 248.338 kb on - strand, within RR42_RS21940 at 248.397 kb on + strand, within RR42_RS21940 at 248.497 kb on - strand, within RR42_RS21940 at 248.574 kb on + strand, within RR42_RS21940 at 248.575 kb on - strand, within RR42_RS21940 at 248.640 kb on + strand, within RR42_RS21940 at 248.701 kb on - strand, within RR42_RS21940 at 248.701 kb on - strand, within RR42_RS21940 at 248.823 kb on + strand at 248.824 kb on - strand at 248.824 kb on - strand at 248.885 kb on + strand at 248.968 kb on - strand at 248.977 kb on - strand at 248.989 kb on + strand at 248.989 kb on + strand at 248.989 kb on + strand at 248.990 kb on - strand at 248.995 kb on + strand at 249.379 kb on + strand, within RR42_RS21945 at 249.380 kb on - strand, within RR42_RS21945 at 249.512 kb on + strand at 249.512 kb on + strand at 249.512 kb on + strand at 249.513 kb on - strand at 249.513 kb on - strand at 249.598 kb on + strand at 249.855 kb on + strand at 249.855 kb on + strand at 249.856 kb on - strand at 249.924 kb on + strand at 249.924 kb on + strand at 249.924 kb on + strand at 249.925 kb on - strand at 249.925 kb on - strand at 249.925 kb on - strand at 249.925 kb on - strand at 249.925 kb on - strand at 249.925 kb on - strand at 249.925 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 246,799 + RR42_RS21935 0.40 +0.5 246,799 + RR42_RS21935 0.40 +0.3 246,823 + RR42_RS21935 0.42 -0.8 246,823 + RR42_RS21935 0.42 -2.5 246,823 + RR42_RS21935 0.42 +0.7 246,823 + RR42_RS21935 0.42 +1.4 246,824 - RR42_RS21935 0.42 +0.4 246,824 - RR42_RS21935 0.42 -1.4 246,939 + RR42_RS21935 0.51 +0.0 246,939 + RR42_RS21935 0.51 +1.9 246,940 - RR42_RS21935 0.51 +1.9 247,096 + RR42_RS21935 0.62 +1.0 247,148 + RR42_RS21935 0.66 -0.6 247,149 - RR42_RS21935 0.66 +0.6 247,201 + RR42_RS21935 0.70 -0.3 247,484 + +0.9 247,684 + -0.9 247,771 - -0.8 247,786 - +0.3 247,786 - -0.4 247,786 - +0.6 247,956 + RR42_RS21940 0.16 +2.1 247,957 - RR42_RS21940 0.16 -2.6 248,016 + RR42_RS21940 0.21 +0.1 248,016 + RR42_RS21940 0.21 -0.4 248,017 - RR42_RS21940 0.21 -1.4 248,017 - RR42_RS21940 0.21 +0.3 248,192 - RR42_RS21940 0.36 +0.1 248,194 + RR42_RS21940 0.37 +0.2 248,274 + RR42_RS21940 0.43 -1.0 248,277 + RR42_RS21940 0.44 +0.9 248,277 + RR42_RS21940 0.44 -0.6 248,278 - RR42_RS21940 0.44 -0.1 248,337 + RR42_RS21940 0.49 +0.9 248,337 + RR42_RS21940 0.49 +0.1 248,338 - RR42_RS21940 0.49 +0.4 248,338 - RR42_RS21940 0.49 +0.5 248,397 + RR42_RS21940 0.54 +1.4 248,497 - RR42_RS21940 0.62 +0.5 248,574 + RR42_RS21940 0.69 +1.6 248,575 - RR42_RS21940 0.69 +0.2 248,640 + RR42_RS21940 0.75 +1.5 248,701 - RR42_RS21940 0.80 -1.1 248,701 - RR42_RS21940 0.80 -1.4 248,823 + +1.9 248,824 - -0.6 248,824 - -1.7 248,885 + +3.2 248,968 - +1.4 248,977 - -1.5 248,989 + -0.6 248,989 + +0.9 248,989 + -1.9 248,990 - +0.7 248,995 + -0.4 249,379 + RR42_RS21945 0.53 +1.0 249,380 - RR42_RS21945 0.53 -2.3 249,512 + -3.0 249,512 + +0.4 249,512 + +0.4 249,513 - -0.5 249,513 - -0.1 249,598 + +1.6 249,855 + +1.5 249,855 + -1.0 249,856 - -0.4 249,924 + -0.1 249,924 + -0.8 249,924 + +0.6 249,925 - +1.0 249,925 - -1.4 249,925 - +0.4 249,925 - +0.4 249,925 - +0.6 249,925 - +0.1 249,925 - -0.0
Or see this region's nucleotide sequence