Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21765

Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21760 and RR42_RS21765 are separated by 139 nucleotidesRR42_RS21765 and RR42_RS21770 are separated by 14 nucleotides RR42_RS21760: RR42_RS21760 - succinate-semialdehyde dehydrogenase, at 210,422 to 211,870 _RS21760 RR42_RS21765: RR42_RS21765 - 3-oxoacyl-ACP reductase, at 212,010 to 212,750 _RS21765 RR42_RS21770: RR42_RS21770 - dihydrolipoamide dehydrogenase, at 212,765 to 214,165 _RS21770 Position (kb) 212 213Strain fitness (log2 ratio) -2 -1 0 1 2at 211.793 kb on - strandat 211.825 kb on + strandat 211.827 kb on + strandat 211.890 kb on - strandat 211.934 kb on - strandat 212.024 kb on - strandat 212.024 kb on - strandat 212.212 kb on - strand, within RR42_RS21765at 212.306 kb on - strand, within RR42_RS21765at 212.392 kb on + strand, within RR42_RS21765at 212.471 kb on - strand, within RR42_RS21765at 212.746 kb on + strandat 212.747 kb on - strandat 212.747 kb on - strandat 212.770 kb on + strandat 212.771 kb on - strandat 212.771 kb on - strandat 212.893 kb on - strandat 212.930 kb on - strand, within RR42_RS21770at 213.111 kb on + strand, within RR42_RS21770at 213.112 kb on - strand, within RR42_RS21770at 213.112 kb on - strand, within RR42_RS21770at 213.243 kb on + strand, within RR42_RS21770at 213.243 kb on + strand, within RR42_RS21770at 213.244 kb on - strand, within RR42_RS21770at 213.286 kb on + strand, within RR42_RS21770at 213.287 kb on - strand, within RR42_RS21770

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM
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211,793 - -0.5
211,825 + +1.6
211,827 + +0.3
211,890 - -1.2
211,934 - -0.1
212,024 - -0.8
212,024 - -1.2
212,212 - RR42_RS21765 0.27 +2.7
212,306 - RR42_RS21765 0.40 +0.3
212,392 + RR42_RS21765 0.52 +0.6
212,471 - RR42_RS21765 0.62 +1.3
212,746 + -0.2
212,747 - -1.1
212,747 - +0.7
212,770 + -0.9
212,771 - -0.3
212,771 - +0.7
212,893 - -2.7
212,930 - RR42_RS21770 0.12 +0.4
213,111 + RR42_RS21770 0.25 +0.1
213,112 - RR42_RS21770 0.25 +0.8
213,112 - RR42_RS21770 0.25 +1.8
213,243 + RR42_RS21770 0.34 +0.1
213,243 + RR42_RS21770 0.34 +0.4
213,244 - RR42_RS21770 0.34 +0.7
213,286 + RR42_RS21770 0.37 +0.7
213,287 - RR42_RS21770 0.37 +0.8

Or see this region's nucleotide sequence